2p4w
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 2p4w |SIZE=350|CAPTION= <scene name='initialview01'>2p4w</scene>, resolution 2.60Å | |PDB= 2p4w |SIZE=350|CAPTION= <scene name='initialview01'>2p4w</scene>, resolution 2.60Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | + | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= PF1790 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 Pyrococcus furiosus]) | |GENE= PF1790 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 Pyrococcus furiosus]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1xnp|1XNP]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p4w OCA], [http://www.ebi.ac.uk/pdbsum/2p4w PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p4w RCSB]</span> | ||
}} | }} | ||
| Line 27: | Line 30: | ||
[[Category: Thomm, M.]] | [[Category: Thomm, M.]] | ||
[[Category: Vierke, G.]] | [[Category: Vierke, G.]] | ||
| - | [[Category: SO4]] | ||
[[Category: archaea]] | [[Category: archaea]] | ||
[[Category: dna binding]] | [[Category: dna binding]] | ||
| Line 35: | Line 37: | ||
[[Category: winged helix]] | [[Category: winged helix]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:29:27 2008'' |
Revision as of 01:29, 31 March 2008
| |||||||
| , resolution 2.60Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | PF1790 (Pyrococcus furiosus) | ||||||
| Related: | 1XNP
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of heat shock regulator from Pyrococcus furiosus
Overview
We report here the crystal structure of a protein from Pyrococcus furiosus (Phr) that represents the first characterized heat shock transcription factor in archaea. Phr specifically represses the expression of heat shock genes at physiological temperature in vitro and in vivo but is released from the promoters upon heat shock response. Structure analysis revealed a stable homodimer, each subunit consisting of an N-terminal winged helix DNA-binding domain (wH-DBD) and a C-terminal antiparallel coiled coil helical domain. The overall structure shows as a molecular chimera with significant folding similarity of its DBD to the bacterial SmtB/ArsR family, while its C-terminal part was found to be a remote homologue of the eukaryotic BAG domain. The dimeric protein recognizes a palindromic DNA sequence. Molecular docking and mutational analyses suggested a novel binding mode in which the major specific contacts occur at the minor groove interacting with the strongly basic wing containing a cluster of three arginine residues.
About this Structure
2P4W is a Single protein structure of sequence from Pyrococcus furiosus. This structure supersedes the now removed PDB entry 1XNP. Full crystallographic information is available from OCA.
Reference
Crystal structure of the archaeal heat shock regulator from Pyrococcus furiosus: a molecular chimera representing eukaryal and bacterial features., Liu W, Vierke G, Wenke AK, Thomm M, Ladenstein R, J Mol Biol. 2007 Jun 1;369(2):474-88. Epub 2007 Mar 24. PMID:17434531
Page seeded by OCA on Mon Mar 31 04:29:27 2008
