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3aho

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Revision as of 07:45, 16 December 2015

PZ PEPTIDASE A with inhibitor 2

Structural highlights

3aho is a 2 chain structure with sequence from Geobacillus sp. mo-1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, ,
Related:	3ahm, 3ahn
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Pz-peptidase A, from the thermophilic bacterium Geobacillus collagenovorans MO-1, hydrolyzes a synthetic peptide substrate, 4-phenylazobenzyloxycarbonyl-Pro-Leu-Gly-Pro-D-Arg (Pz-PLGPR), which contains a collagen-specific tripeptide sequence, -Gly-Pro-X-, but does not act on collagen proteins themselves. The mammalian enzyme, thimet oligopeptidase (TOP), which has comparable functions with bacterial Pz-peptidases but limited identity at the primary sequence level, has recently been subjected to x-ray crystallographic analysis; however, no crystal structure has yet been reported for complexes of TOP with substrate analogues. Here, we report crystallization of recombinant Pz-peptidase A in complex with two phosphinic peptide inhibitors (PPIs) that also function as inhibitors of TOP and determination of the crystal structure of these complexes at 1.80-2.00 A resolution. The most striking difference between Pz-peptidase A and TOP is that there is no channel running the length of bacterial protein. Whereas the structure of TOP resembles an open bivalve, that of Pz-peptidase A is closed and globular. This suggests that collagenous peptide substrates enter the tunnel at the top gateway of the closed Pz-peptidase A molecule, and reactant peptides are released from the bottom gateway after cleavage at the active site located in the center of the tunnel. One of the two PPIs, PPI-2, which contains the collagen-specific sequence, helped to clarify the exquisite structure and reaction mechanism of Pz-peptidase A toward collagenous peptides. This study describes the mode of substrate binding and its implication for the mammalian enzymes.

The exquisite structure and reaction mechanism of bacterial Pz-peptidase A toward collagenous peptides: X-ray crystallographic structure analysis of PZ-peptidase a reveals differences from mammalian thimet oligopeptidase.,Kawasaki A, Nakano H, Hosokawa A, Nakatsu T, Kato H, Watanabe K J Biol Chem. 2010 Nov 5;285(45):34972-80. Epub 2010 Sep 3. PMID:20817732^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kawasaki A, Nakano H, Hosokawa A, Nakatsu T, Kato H, Watanabe K. The exquisite structure and reaction mechanism of bacterial Pz-peptidase A toward collagenous peptides: X-ray crystallographic structure analysis of PZ-peptidase a reveals differences from mammalian thimet oligopeptidase. J Biol Chem. 2010 Nov 5;285(45):34972-80. Epub 2010 Sep 3. PMID:20817732 doi:10.1074/jbc.M110.141838

1 Structural highlights
2 Evolutionary Conservation
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3aho"

Categories: Geobacillus sp. mo-1 | Nakano, H | Hydrolase | Hydrolase-hydrolase inhibitor complex

@@ Line 5: / Line 5: @@
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3A2:1-{3-[(R)-{(1R)-1-[(GLYCYL-L-PROLYL)AMINO]-2-PHENYLETHYL}(HYDROXY)PHOSPHORYL]PROPANOYL}-L-PROLYL-D-NORLEUCINE'>3A2</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ahm|3ahm]], [[3ahn|3ahn]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aho OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3aho RCSB], [http://www.ebi.ac.uk/pdbsum/3aho PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aho OCA], [http://pdbe.org/3aho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aho RCSB], [http://www.ebi.ac.uk/pdbsum/3aho PDBsum]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 25: / Line 25: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3aho" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>

3aho

From Proteopedia

Revision as of 07:45, 16 December 2015

PZ PEPTIDASE A with inhibitor 2

Structural highlights

Evolutionary Conservation

Publication Abstract from PubMed

References

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Proteopedia Page Contributors and Editors (what is this?)

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