2ped
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 2ped |SIZE=350|CAPTION= <scene name='initialview01'>2ped</scene>, resolution 2.95Å | |PDB= 2ped |SIZE=350|CAPTION= <scene name='initialview01'>2ped</scene>, resolution 2.95Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=HTG:HEPTYL+1-THIOHEXOPYRANOSIDE'>HTG</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1u19|1U19]], [[2g87|2G87]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ped FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ped OCA], [http://www.ebi.ac.uk/pdbsum/2ped PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ped RCSB]</span> | ||
}} | }} | ||
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[[Category: Nakamichi, H.]] | [[Category: Nakamichi, H.]] | ||
[[Category: Okada, T.]] | [[Category: Okada, T.]] | ||
| - | [[Category: ACE]] | ||
| - | [[Category: HG]] | ||
| - | [[Category: HTG]] | ||
| - | [[Category: HTO]] | ||
| - | [[Category: PLM]] | ||
| - | [[Category: RET]] | ||
| - | [[Category: ZN]] | ||
[[Category: g protein-coupled receptor]] | [[Category: g protein-coupled receptor]] | ||
[[Category: rhodopsin]] | [[Category: rhodopsin]] | ||
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[[Category: visual pigment]] | [[Category: visual pigment]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:34:44 2008'' |
Revision as of 01:34, 31 March 2008
| |||||||
| , resolution 2.95Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , , , , , | ||||||
| Related: | 1U19, 2G87
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystallographic model of 9-cis-rhodopsin
Overview
The primary photochemical process of the visual function has been investigated using the three crystallographic models, 11-cis-rhodopsin, all-trans-bathorhodopsin, and the artificial isomeric 9-cis-rhodopsin. Detailed examination of the atomic displacements and dihedral angle changes of the retinal chromophore involved in the interconversion among these isomers suggests the mechanism of isomerization efficiency.
About this Structure
2PED is a Single protein structure of sequence from Bos taurus. Full crystallographic information is available from OCA.
Reference
Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography., Nakamichi H, Buss V, Okada T, Biophys J. 2007 Jun 15;92(12):L106-8. Epub 2007 Apr 20. PMID:17449675
Page seeded by OCA on Mon Mar 31 04:34:44 2008
