Sandbox WWC3

From Proteopedia

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'''
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==Your Heading Here (maybe something like 'Structure')==
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
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This is a default text for your page '''Sandbox WWC3'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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''Hello, World!'' This is my''' Proteopedia''' page.'''
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== Function ==
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== Disease ==
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<Structure load='<applet load='1pgb' size='350' frame='true' align='right' caption='1pgb' scene='Insert optional scene name here' />
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== Relevance ==
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== Structural highlights ==
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[[Image:MW_Folding_Simulations.gif]]
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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</StructureSection>
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== References ==
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<scene name='69/696300/N_to_c_rainbow/1'>color coded N to C sequence</scene>
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<references/>
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{{Template:ColorKey_Amino2CarboxyRainbow}}
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<scene name='69/696300/Hydrophobic_and_polar/1'>hydrophobic and polar</scene>
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{{Template:ColorKey_Hydrophobic}}
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{{Template:ColorKey_Polar}}
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Let us distinguish between the hydrophobic and hyrdrophillic portions of the protein 1pgb by coloring the hydrophobic portions grey and the polar portions pink.
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<scene name='69/696300/Secondary_structure_1pgb/1'>Secondary Structure</scene>
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{{Template:ColorKey_Helix}}
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{{Template:ColorKey_Strand}}
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{{Template:ColorKey_Loop}}
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{{Template:ColorKey_Turn}}
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<quiz display=simple>{How many alpha helices are in this structure?}
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-None.
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+One.
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-Four.
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</quiz>
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<Structure load='1acj' size='350' frame='true' align='right' caption='1acj' scene='Insert optional scene name here' />
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The 1acj protein has a ligand known as Tacrine.
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<scene name='69/696300/1acj_tacrine/3'>Tacrine</scene>
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Revision as of 17:54, 25 March 2016

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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