Sandbox Reserved 1056

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{{#tree:id=OrganizedByTopic|openlevels=0|
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*Isocitrate Lyase from "M. Tuberculosis"
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*2Fe-2S containing ferredoxins
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**[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
 +
**[[3hui]], [[4ltu]] – Fd – ''Rhodopseudomonas palustris'' <br />
 +
**[[1off]] – SyFd <br />
 +
**[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
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**[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
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**[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
 +
**[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
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**[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br />
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**[[1e9m]] – RcFd - NMR<br />
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**[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
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**[[1vck]] - Fd – ''Pseudomonas resinovorans'' <br />
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**[[1wri]], [[1frr]] - Fd – E''quisetum arvense'' <br />
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**[[1sjg]] - PmFd– NMR <br />
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**[[1iue]] - Fd– ''Plasmodium falciparum'' <br />
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**[[1m2a]] – AeFd – ''Aquifex aeolicu''s <br />
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**[[1m2b]], [[1m2d]], [[1f37]], [[1f5b]], [[1f5c]] – AeFd (mutant) <br />
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**[[1l5p]] – Fd – ''Trichomonas vaginali''s <br />
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**[[1i7h]] - Fd – ''Escherichia coli'' <br />
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**[[1czp]], [[1qt9]], [[1frd]], [[1fxa]] - aFd– ''anabaena'' <br />
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**[[1j7a]], [[1j7b]], [[1j7c]] , [[1qoa]], [[1qob]], [[1qof]], [[1qog]]- aFd (mutant) <br />
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**[[1e0z]] – Fd – ''Halobacterium salinarium'' <br />
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**[[1e10]] - Fd – ''Halobacterium halobium''<br />
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**[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
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**[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br />
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**[[1awd]] - Fd – ''Chlorella fusca'' <br />
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**[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
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**[[1rof]] – SyFd – ''Synechococcus elongates'' <br />
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**[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
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**[[4fxc]] – Fd – ''Spirulina platensi''s <br />
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**[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
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**[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br />
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**[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
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**[[3b2f]] – mFd – maize<br />
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**[[3w5u]], [[3w5v]], [[1gaq]] – mFd + ferredoxin-NADP reductase<br />
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**[[3b2g]] – Fd – ''Leptolyngbya boryana''<br />
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**[[2mh7]] – Fd – ''Chlamydomonas reinhardtii''<br />
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**[[1ewy]] – Fd + ferredoxin-NADP reductase - ''Nostoc''<br />
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**[[1F61]] ICL apoenzyme from "M. Tuberculosis" <br />
 
== References ==
== References ==
<references/>
<references/>

Revision as of 18:48, 9 April 2015

Isocitrate Lyase from Mycobacterium Tuberculosis

PDB ID 1F8I

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3D Structures of Isocitrate Lyase

Updated on 09-April-2015 {{#tree:id=OrganizedByTopic|openlevels=0|

  • 2Fe-2S containing ferredoxins
    • 2kaj, 1dox, 1doy – SyFd +Ga – Synechocystis – NMR
    • 3hui, 4ltu – Fd – Rhodopseudomonas palustris
    • 1off – SyFd
    • 3gce – Fd – Nocardioides aromaticivorans
    • 3lxf – Fd – Novosphingobium aromaticivorans
    • 2e4p, 2e4q - Fd – Pseudomonas sp.
    • 2q3w, 1vm9 - PmFd (mutant) – Pseudomonas mendocina
    • 2i7f, 1uwm - RcFd – Rhodobacter capsulatus
    • 1e9m – RcFd - NMR
    • 1rfk, 3p63 - Fd – Cyanobacterium masticogladus laminosus
    • 1vck - Fd – Pseudomonas resinovorans
    • 1wri, 1frr - Fd – Equisetum arvense
    • 1sjg - PmFd– NMR
    • 1iue - Fd– Plasmodium falciparum
    • 1m2a – AeFd – Aquifex aeolicus
    • 1m2b, 1m2d, 1f37, 1f5b, 1f5c – AeFd (mutant)
    • 1l5p – Fd – Trichomonas vaginalis
    • 1i7h - Fd – Escherichia coli
    • 1czp, 1qt9, 1frd, 1fxa - aFd– anabaena
    • 1j7a, 1j7b, 1j7c , 1qoa, 1qob, 1qof, 1qog- aFd (mutant)
    • 1e0z – Fd – Halobacterium salinarium
    • 1e10 - Fd – Halobacterium halobium
    • 1pfd – Fd – Petroselinum crispum – NMR
    • 1a70 - Fd (mutant) – Spinacia oleracea
    • 1awd - Fd – Chlorella fusca
    • 2cjn, 2cjo, 1roe – SyFd – NMR
    • 1rof – SyFd – Synechococcus elongates
    • 1doi - Fd – Haloarcula marismortui
    • 4fxc – Fd – Spirulina platensis
    • 1fxi, 3av8 – Fd – Aphanothece sacrum
    • 3dqy, 2qpz, 3ah7 - Fd – Pseudomonas putida
    • 3ab5, 3wcq – Fd – Cyanidioschyzon merolae
    • 3b2f – mFd – maize
    • 3w5u, 3w5v, 1gaq – mFd + ferredoxin-NADP reductase
    • 3b2g – Fd – Leptolyngbya boryana
    • 2mh7 – Fd – Chlamydomonas reinhardtii
    • 1ewy – Fd + ferredoxin-NADP reductase - Nostoc


References

  1. ↑ Srivastava V, Jain A, Srivastava BS, Srivastava R. Selection of genes of Mycobacterium tuberculosis upregulated during residence in lungs of infected mice. Tuberculosis (Edinb). 2008 May;88(3):171-7. Epub 2007 Dec 3. PMID:18054522 doi:http://dx.doi.org/10.1016/j.tube.2007.10.002
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sharma V, Sharma S, Hoener zu Bentrup K, McKinney JD, Russell DG, Jacobs WR Jr, Sacchettini JC. Structure of isocitrate lyase, a persistence factor of Mycobacterium tuberculosis. Nat Struct Biol. 2000 Aug;7(8):663-8. PMID:10932251 doi:10.1038/77964
  3. ↑ 3.0 3.1 3.2 Beeching JR. High sequence conservation between isocitrate lyase from Escherichia coli and Ricinus communis. Protein Seq Data Anal. 1989 Dec;2(6):463-6. PMID:2696959
  4. ↑ 4.0 4.1 4.2 4.3 Masamune et al. Bio-Claisen condensation catalyzed by thiolase from Zoogloea ramigera. Active site cysteine residues. "Journal of the American Chemical Society" 111: 1879-1881 (1989). DOI: 10.1021/ja00187a053
  5. ↑ Connely, M. L. Solvent-accessible surfaces of proteins and nucleic acids "Science" 221:709-713 (1983). DOI: 10.1126/science.6879170
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