2v8k
From Proteopedia
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|PDB= 2v8k |SIZE=350|CAPTION= <scene name='initialview01'>2v8k</scene>, resolution 2.1Å | |PDB= 2v8k |SIZE=350|CAPTION= <scene name='initialview01'>2v8k</scene>, resolution 2.1Å | ||
|SITE= <scene name='pdbsite=AC1:Tgu+Binding+Site+For+Chain+A'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Tgu+Binding+Site+For+Chain+A'>AC1</scene> | ||
| - | |LIGAND= <scene name='pdbligand=TGU:TRIGALACTURONIC ACID'>TGU</scene> | + | |LIGAND= <scene name='pdbligand=TGU:TRIGALACTURONIC+ACID'>TGU</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[2v8i|2V8I]], [[2v8j|2V8J]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8k OCA], [http://www.ebi.ac.uk/pdbsum/2v8k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2v8k RCSB]</span> | ||
}} | }} | ||
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[[Category: Abbott, D W.]] | [[Category: Abbott, D W.]] | ||
[[Category: Boraston, A B.]] | [[Category: Boraston, A B.]] | ||
| - | [[Category: TGU]] | ||
[[Category: beta-elimination]] | [[Category: beta-elimination]] | ||
[[Category: lyase]] | [[Category: lyase]] | ||
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[[Category: periplasm]] | [[Category: periplasm]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:09:37 2008'' |
Revision as of 02:09, 31 March 2008
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| , resolution 2.1Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | |||||||
| Activity: | Pectate lyase, with EC number 4.2.2.2 | ||||||
| Related: | 2V8I, 2V8J
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF A FAMILY 2 PECTATE LYASE IN COMPLEX WITH TRIGALACTURONIC ACID
Overview
The family 2 pectate lyase from Yersinia enterocolitica (YePL2A), solved to 1.5A, reveals it to be the first prokaryotic protein reported to display the rare (alpha/alpha)(7) barrel fold. In addition to its apo form, we have also determined the structure of a metal-bound form of YePL2A (to 2.0A) and a trigalacturonic acid-bound substrate complex (to 2.1A) Although its fold is rare, the catalytic center of YePL2A can be superimposed with structurally unrelated families, underlining the conserved catalytic amino acid architecture of the beta-elimination mechanism. In addition to its overall structure, YePL2A also has two other unique features: 1) it utilizes a metal atom other than calcium for catalysis, and 2) its Bronstead base is in an alternate conformation and directly interacts with the uronate group of the substrate.
About this Structure
2V8K is a Single protein structure of sequence from Yersinia enterocolitica. Full crystallographic information is available from OCA.
Reference
A family 2 pectate lyase displays a rare fold and transition metal-assisted beta-elimination., Abbott DW, Boraston AB, J Biol Chem. 2007 Nov 30;282(48):35328-36. Epub 2007 Sep 19. PMID:17881361
Page seeded by OCA on Mon Mar 31 05:09:37 2008
