Connexin
From Proteopedia
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The extracellular loop E1 contains a 310 helix at the beginning and a short a-helix in its C-terminal half E2, together with E1, contains a short antiparallel β-sheet and stretches over E1, forming the outside wall of the connexon. Six conserved cysteine residues, three in each loop, form intramolecular disulphide bonds between E1 and E2 Most of the prominent intra-protomer interactions are in the extracellular part of the transmembrane region, Our structure revealed the interactions between the two adjoining connexons of the gap junction channel, which involve both E1 and E2 . The N-terminal half of E2 seems rather flexible and its amino-acid sequence varies greatly among connexins . The C-terminal half of E2 begins with a 310 turn is followed by a conserved Pro-Cys-Pro motif that reverses its direction back to TM4. Most of the prominent intra-protomer interactions are in the extracellular part of the transmembrane region (Fig. 4a ). Arg 32 (TM1) interactswithGln 80 (TM2),Glu 147 (TM3), and Ser 199 (TM4). Two hydrophobic cores around Trp 44 (E1) and Trp 77 (TM2) stabilize the protomer structure. Ala 39 (TM1), Ala 40 (TM1), Val 43 (E1) and Ile 74 (TM2) contribute to the first hydrophobic core around Trp 44, and Phe 154 (TM3) and Met 195 (TM4) form the second core with Trp 77 . In the intracellular part of the transmembrane region, Arg 143 (TM3) forms hydrogen bonds with Asn 206 (TM3) and Ser 139 (TM3) .<ref name='Structure'/> | The extracellular loop E1 contains a 310 helix at the beginning and a short a-helix in its C-terminal half E2, together with E1, contains a short antiparallel β-sheet and stretches over E1, forming the outside wall of the connexon. Six conserved cysteine residues, three in each loop, form intramolecular disulphide bonds between E1 and E2 Most of the prominent intra-protomer interactions are in the extracellular part of the transmembrane region, Our structure revealed the interactions between the two adjoining connexons of the gap junction channel, which involve both E1 and E2 . The N-terminal half of E2 seems rather flexible and its amino-acid sequence varies greatly among connexins . The C-terminal half of E2 begins with a 310 turn is followed by a conserved Pro-Cys-Pro motif that reverses its direction back to TM4. Most of the prominent intra-protomer interactions are in the extracellular part of the transmembrane region (Fig. 4a ). Arg 32 (TM1) interactswithGln 80 (TM2),Glu 147 (TM3), and Ser 199 (TM4). Two hydrophobic cores around Trp 44 (E1) and Trp 77 (TM2) stabilize the protomer structure. Ala 39 (TM1), Ala 40 (TM1), Val 43 (E1) and Ile 74 (TM2) contribute to the first hydrophobic core around Trp 44, and Phe 154 (TM3) and Met 195 (TM4) form the second core with Trp 77 . In the intracellular part of the transmembrane region, Arg 143 (TM3) forms hydrogen bonds with Asn 206 (TM3) and Ser 139 (TM3) .<ref name='Structure'/> | ||
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=Differences between wild type and mutant connexin 26:= | =Differences between wild type and mutant connexin 26:= | ||
In general, single site mutations are spread fairly evenly across the whole protein with TM2 having the highest mutation density (number of amino acids with NHLS mutations divided by the total number of amino acids in the domain) at 67% to M1 and E1 having the lowest density of mutations with their respective domains at 33%. According to this criterion, TM4 has a mutation density of 40%. . Of the four transmembrane helices, M1, M2 and M3 have attracted the most attention, because of the controversies involved in models with different helix assignments, based on lower resolution cryo-electron crystallographic structures and scanning cysteine accessibility mutagenesis . Far less is known about TM4 and how side chains interact with the other helices and with the lipid bilayer. <ref name='mutant int'/> | In general, single site mutations are spread fairly evenly across the whole protein with TM2 having the highest mutation density (number of amino acids with NHLS mutations divided by the total number of amino acids in the domain) at 67% to M1 and E1 having the lowest density of mutations with their respective domains at 33%. According to this criterion, TM4 has a mutation density of 40%. . Of the four transmembrane helices, M1, M2 and M3 have attracted the most attention, because of the controversies involved in models with different helix assignments, based on lower resolution cryo-electron crystallographic structures and scanning cysteine accessibility mutagenesis . Far less is known about TM4 and how side chains interact with the other helices and with the lipid bilayer. <ref name='mutant int'/> |
Revision as of 08:25, 19 May 2015
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References
- ↑ Zonta F, Buratto D, Cassini C, Bortolozzi M, Mammano F. Molecular dynamics simulations highlight structural and functional alterations in deafness-related M34T mutation of connexin 26. Front Physiol. 2014 Mar 4;5:85. doi: 10.3389/fphys.2014.00085. eCollection 2014. PMID:24624091 doi:http://dx.doi.org/10.3389/fphys.2014.00085
- ↑ 2.0 2.1 2.2 2.3 Suga M, Maeda S, Nakagawa S, Yamashita E, Tsukihara T. A description of the structural determination procedures of a gap junction channel at 3.5 A resolution. Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):758-66. Epub 2009, Jul 10. PMID:19622859 doi:http://dx.doi.org/10.1107/S0907444909014711
- ↑ http://en.wikipedia.org/wiki/Connexin
- ↑ 4.0 4.1 Ambrosi C, Walker AE, Depriest AD, Cone AC, Lu C, Badger J, Skerrett IM, Sosinsky GE. Analysis of trafficking, stability and function of human connexin 26 gap junction channels with deafness-causing mutations in the fourth transmembrane helix. PLoS One. 2013 Aug 15;8(8):e70916. doi: 10.1371/journal.pone.0070916. eCollection, 2013. PMID:23967136 doi:http://dx.doi.org/10.1371/journal.pone.0070916
- ↑ 5.0 5.1 5.2 Oshima A, Tani K, Toloue MM, Hiroaki Y, Smock A, Inukai S, Cone A, Nicholson BJ, Sosinsky GE, Fujiyoshi Y. Asymmetric Configurations and N-terminal Rearrangements in Connexin26 Gap Junction Channels. J Mol Biol. 2011 Jan 21;405(3):724-35. Epub 2010 Nov 20. PMID:21094651 doi:10.1016/j.jmb.2010.10.032
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