1hk8
From Proteopedia
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|PDB= 1hk8 |SIZE=350|CAPTION= <scene name='initialview01'>1hk8</scene>, resolution 2.45Å | |PDB= 1hk8 |SIZE=350|CAPTION= <scene name='initialview01'>1hk8</scene>, resolution 2.45Å | ||
|SITE= <scene name='pdbsite=DG1:Zn2++Binding+Site+For+Chain+A'>DG1</scene> | |SITE= <scene name='pdbsite=DG1:Zn2++Binding+Site+For+Chain+A'>DG1</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=DGT:2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Ribonucleoside-triphosphate_reductase Ribonucleoside-triphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.2 1.17.4.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-triphosphate_reductase Ribonucleoside-triphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.2 1.17.4.2] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hk8 OCA], [http://www.ebi.ac.uk/pdbsum/1hk8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1hk8 RCSB]</span> | ||
}} | }} | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1HK8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ | + | 1HK8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. This structure supersedes the now removed PDB entry 1H77. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HK8 OCA]. |
==Reference== | ==Reference== | ||
A metal-binding site in the catalytic subunit of anaerobic ribonucleotide reductase., Logan DT, Mulliez E, Larsson KM, Bodevin S, Atta M, Garnaud PE, Sjoberg BM, Fontecave M, Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3826-31. Epub 2003 Mar 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12655046 12655046] | A metal-binding site in the catalytic subunit of anaerobic ribonucleotide reductase., Logan DT, Mulliez E, Larsson KM, Bodevin S, Atta M, Garnaud PE, Sjoberg BM, Fontecave M, Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3826-31. Epub 2003 Mar 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12655046 12655046] | ||
| - | [[Category: Enterobacteria phage | + | [[Category: Enterobacteria phage t4]] |
[[Category: Ribonucleoside-triphosphate reductase]] | [[Category: Ribonucleoside-triphosphate reductase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: Nordlund, P.]] | [[Category: Nordlund, P.]] | ||
[[Category: Sjoeberg, B M.]] | [[Category: Sjoeberg, B M.]] | ||
| - | [[Category: DGT]] | ||
| - | [[Category: MN]] | ||
| - | [[Category: ZN]] | ||
[[Category: allosteric regulation]] | [[Category: allosteric regulation]] | ||
[[Category: oxidoreductase]] | [[Category: oxidoreductase]] | ||
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[[Category: substrate specificity]] | [[Category: substrate specificity]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:06:31 2008'' |
Revision as of 18:06, 30 March 2008
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| , resolution 2.45Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | , , | ||||||
| Activity: | Ribonucleoside-triphosphate reductase, with EC number 1.17.4.2 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DGTP
Overview
A Zn(Cys)(4) center has been found in the C-terminal region of the crystal structure of the anaerobic class III ribonucleotide reductase (RNR) from bacteriophage T4. The metal center is structurally related to the zinc ribbon motif and to rubredoxin and rubrerythrin. Mutant enzymes of the homologous RNR from Escherichia coli, in which the coordinating cysteines, conserved in almost all known class III RNR sequences, have been mutated into alanines, are shown to be inactive as the result of their inability to generate the catalytically essential glycyl radical. The possible roles of the metal center are discussed in relationship to the currently proposed reaction mechanism for generation of the glycyl radical in class III RNRs.
About this Structure
1HK8 is a Single protein structure of sequence from Enterobacteria phage t4. This structure supersedes the now removed PDB entry 1H77. Full crystallographic information is available from OCA.
Reference
A metal-binding site in the catalytic subunit of anaerobic ribonucleotide reductase., Logan DT, Mulliez E, Larsson KM, Bodevin S, Atta M, Garnaud PE, Sjoberg BM, Fontecave M, Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3826-31. Epub 2003 Mar 24. PMID:12655046
Page seeded by OCA on Sun Mar 30 21:06:31 2008
