This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1vkc
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Putative acetyl transferase from Pyrococcus furiosus== | ==Putative acetyl transferase from Pyrococcus furiosus== | ||
<StructureSection load='1vkc' size='340' side='right' caption='[[1vkc]], [[Resolution|resolution]] 1.89Å' scene=''> | <StructureSection load='1vkc' size='340' side='right' caption='[[1vkc]], [[Resolution|resolution]] 1.89Å' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[1vkc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VKC FirstGlance]. <br> | <table><tr><td colspan='2'>[[1vkc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VKC FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkc OCA], [http://pdbe.org/1vkc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vkc RCSB], [http://www.ebi.ac.uk/pdbsum/1vkc PDBsum], [http://www.topsan.org/Proteins/SECSG/1vkc TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkc OCA], [http://pdbe.org/1vkc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vkc RCSB], [http://www.ebi.ac.uk/pdbsum/1vkc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vkc ProSAT], [http://www.topsan.org/Proteins/SECSG/1vkc TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 10: | Line 11: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkc_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkc_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vkc ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
Revision as of 07:19, 4 April 2018
Putative acetyl transferase from Pyrococcus furiosus
| |||||||||||
Categories: Atcc 43587 | Adams, M W.W | Brereton, P S | Habel, J E | II, F L.Poole | Izumi, M | Jr, F E.Jenney | Liu, Z J | Richardson, D C | Richardson, J S | Rose, J P | Structural genomic | Shah, C | Sugar, F J | Tempel, W | Wang, B C | Acetyl transferase | PSI, Protein structure initiative | Pyrococcus furiosus | Secsg | Transferase

