This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2b0v
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==NUDIX hydrolase from Nitrosomonas europaea.== | ==NUDIX hydrolase from Nitrosomonas europaea.== | ||
<StructureSection load='2b0v' size='340' side='right' caption='[[2b0v]], [[Resolution|resolution]] 1.55Å' scene=''> | <StructureSection load='2b0v' size='340' side='right' caption='[[2b0v]], [[Resolution|resolution]] 1.55Å' scene=''> | ||
| Line 6: | Line 7: | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NE0184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 "Bacterium nitrosomonas" Lehmann and Neumann 1899])</td></tr> | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NE0184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 "Bacterium nitrosomonas" Lehmann and Neumann 1899])</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b0v OCA], [http://pdbe.org/2b0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2b0v RCSB], [http://www.ebi.ac.uk/pdbsum/2b0v PDBsum], [http://www.topsan.org/Proteins/MCSG/2b0v TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b0v OCA], [http://pdbe.org/2b0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2b0v RCSB], [http://www.ebi.ac.uk/pdbsum/2b0v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2b0v ProSAT], [http://www.topsan.org/Proteins/MCSG/2b0v TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b0/2b0v_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b0/2b0v_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b0v ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
| Line 23: | Line 24: | ||
[[Category: Edwards, A]] | [[Category: Edwards, A]] | ||
[[Category: Joachimiak, A]] | [[Category: Joachimiak, A]] | ||
| + | [[Category: MCSG]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
| - | [[Category: Mcsg]] | ||
[[Category: Osipiuk, J]] | [[Category: Osipiuk, J]] | ||
[[Category: Savchenko, A]] | [[Category: Savchenko, A]] | ||
[[Category: Skarina, T]] | [[Category: Skarina, T]] | ||
| + | [[Category: Mcsg]] | ||
[[Category: Nudix hydrolase]] | [[Category: Nudix hydrolase]] | ||
[[Category: PSI, Protein structure initiative]] | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Revision as of 18:44, 24 January 2018
NUDIX hydrolase from Nitrosomonas europaea.
| |||||||||||
