1b35

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(Difference between revisions)

Revision as of 06:14, 17 August 2017

CRICKET PARALYSIS VIRUS (CRPV)

Structural highlights

1b35 is a 4 chain structure with sequence from Cricket paralysis virus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[POLS_CRPVC] Structural polyprotein: precursor of all the viral capsid proteins. Capsid protein 1, together with capsid proteins 2 and 3, form an icosahedral capsid protecting the viral RNA genome. The icosahedral capsid has a pseudo-T=3 symmetry with a diameter of approximately 300 Angstroms, and is composed of 60 copies of each CP1, CP2, and CP3. CP1 is situated at the 12 fivefold axes, whereas CP2 and CP3 are located at the quasi-sixfold axes. All these proteins contain a beta-sheet structure called beta-barrel jelly roll. Capsid protein 4 is a tstructural component of the icosahedral capsid protecting the genomic RNA. It may play an important role in capsid assembly. Capsid protein 2, together with capsid proteins 1 and 3, form an icosahedral capsid protecting the viral RNA genome. The icosahedral capsid has a pseudo-T=3 symmetry with a diameter of approximately 300 Angstroms, and is composed of 60 copies of each CP1, CP2, and CP3. CP1 is situated at the 12 fivefold axes, whereas CP2 and CP3 are located at the quasi-sixfold axes. All these proteins contain a beta-sheet structure called beta-barrel jelly roll. Capsid protein 3, together with capsid proteins 1 and 2, form an icosahedral capsid protecting the viral RNA genome. The icosahedral capsid has a pseudo-T=3 symmetry with a diameter of approximately 300 Angstroms, and is composed of 60 copies of each CP1, CP2, and CP3. CP1 is situated at the 12 fivefold axes, whereas CP2 and CP3 are located at the quasi-sixfold axes. All these proteins contain a beta-sheet structure called beta-barrel jelly roll.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Numerous small, RNA-containing insect viruses are currently classified as picornaviruses, or as 'picorna-like', since they superficially resemble the true picornaviruses. Considerable evidence now suggests that several of these viruses are members of a distinct family. We have determined the gene sequence of the capsid proteins and the 2.4 A resolution crystal structure of the cricket paralysis virus. While the genome sequence indicates that the insect picorna-like viruses represent a distinct lineage compared to true picornaviruses, the capsid structure demonstrates that the two groups are related. These viral genomes are, thus, best viewed as composed of exchangeable modules that have recombined.

The crystal structure of cricket paralysis virus: the first view of a new virus family.,Tate J, Liljas L, Scotti P, Christian P, Lin T, Johnson JE Nat Struct Biol. 1999 Aug;6(8):765-74. PMID:10426956^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Tate J, Liljas L, Scotti P, Christian P, Lin T, Johnson JE. The crystal structure of cricket paralysis virus: the first view of a new virus family. Nat Struct Biol. 1999 Aug;6(8):765-74. PMID:10426956 doi:http://dx.doi.org/10.1038/11543

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1b35"

@@ Line 1: / Line 1: @@
 ==CRICKET PARALYSIS VIRUS (CRPV)==
 <StructureSection load='1b35' size='340' side='right' caption='[[1b35]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1b35]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Crpv Crpv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B35 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B35 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1b35]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cricket_paralysis_virus Cricket paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B35 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B35 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b35 OCA], [http://pdbe.org/1b35 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1b35 RCSB], [http://www.ebi.ac.uk/pdbsum/1b35 PDBsum]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b35 OCA], [http://pdbe.org/1b35 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1b35 RCSB], [http://www.ebi.ac.uk/pdbsum/1b35 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1b35 ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 15: / Line 16: @@
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b35 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 30: / Line 31: @@
 __TOC__
 </StructureSection>
-[[Category: Crpv]]
+[[Category: Cricket paralysis virus]]
 [[Category: Christian, P D]]
 [[Category: Johnson, J E]]

1b35

From Proteopedia

Revision as of 06:14, 17 August 2017

CRICKET PARALYSIS VIRUS (CRPV)

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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