This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2j5k
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| - | ==2.0 A | + | |
| + | ==2.0 A resolution structure of the wild type malate dehydrogenase from Haloarcula marismortui (radiation damage series)== | ||
<StructureSection load='2j5k' size='340' side='right' caption='[[2j5k]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='2j5k' size='340' side='right' caption='[[2j5k]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| Line 6: | Line 7: | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1d3a|1d3a]], [[1gt2|1gt2]], [[1hlp|1hlp]], [[1o6z|1o6z]], [[2hlp|2hlp]], [[2j5q|2j5q]], [[2j5r|2j5r]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1d3a|1d3a]], [[1gt2|1gt2]], [[1hlp|1hlp]], [[1o6z|1o6z]], [[2hlp|2hlp]], [[2j5q|2j5q]], [[2j5r|2j5r]]</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j5k OCA], [http://pdbe.org/2j5k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j5k RCSB], [http://www.ebi.ac.uk/pdbsum/2j5k PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j5k OCA], [http://pdbe.org/2j5k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j5k RCSB], [http://www.ebi.ac.uk/pdbsum/2j5k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2j5k ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| Line 14: | Line 15: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/2j5k_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/2j5k_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j5k ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
Revision as of 06:40, 11 July 2018
2.0 A resolution structure of the wild type malate dehydrogenase from Haloarcula marismortui (radiation damage series)
| |||||||||||


