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NADP-dependent malic enzyme

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== NADP-dependent malic enzyme ==
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xml format
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<StructureSection load='3wja' size='340' side='right' caption='The best structure for NADP-dependent malic enzyme shown: 3wja' scene=''>
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Viruses
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Best example is 3wja and is shown in the viewer.<br>
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Eukaryota
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Molecule NADP-dependent malic enzyme, also known as NADP-ME, NADP-dependent malic enzyme and Malic enzyme 1.
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Bacteria
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== Lysozyme ==
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<StructureSection load='1swy' size='340' side='right' caption='The best structure for Lysozyme shown: 1swy' scene=''>
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Best example is 1swy and is shown in the viewer.<br>
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Molecule Lysozyme, also known as Lysozyme, CP-7 lysin, Muramidase, Endolysin, 1,4-beta-N-acetylmuramidase, Lysis protein, CP-1 lysin, Lysozyme murein hydrolase, Protein gp17, Transglycosylase, Hevamine-A, Chitinase and L-alanyl-D-glutamate peptidase.
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== Function ==
==Catalytic Activity ==
==Catalytic Activity ==
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== Biological process ==
== Biological process ==
Is involved in the following biological processes:<br>
Is involved in the following biological processes:<br>
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malate metabolic process<br>
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cell wall macromolecule catabolic process<br>
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oxidation-reduction process<br>
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peptidoglycan catabolic process<br>
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response to carbohydrate<br>
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metabolic process<br>
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response to hormone<br>
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defense response to bacterium<br>
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cytolysis<br>
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viral release from host cell<br>
carbohydrate metabolic process<br>
carbohydrate metabolic process<br>
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protein tetramerization<br>
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chitin catabolic process<br>
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regulation of NADP metabolic process<br>
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polysaccharide catabolic process<br>
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NADP biosynthetic process<br>
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cytolysis by virus of host cell<br>
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small molecule metabolic process<br>
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cell wall organization<br>
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cellular lipid metabolic process<br>
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== In structures ==
== In structures ==
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NADP-dependent malic enzyme is found in 3 PDB entries<br>
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Lysozyme is found in 595 PDB entries<br>
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*<b>Eukaryota</b> (3 PDB entries): <br>
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*<b>Viruses</b> (578 PDB entries): <br>
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**<b>Homo sapiens</b> (2 PDB entries): <br>
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**<b>Enterobacteria phage T4</b> (561 PDB entries): <br>
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***[[3wja]] <div class="pdb-prints 3wja"></div>
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***[[1swy]] <div class="pdb-prints 1swy"></div>
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***Title: The crystal structure of human cytosolic NADP(+)-dependent malic enzyme in apo form
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***Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination
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***2.548 A resolution
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***1.06 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Homo%20sapiens%22&all_molecule_names:%22NADP-dependent%20malic%20enzyme%22&!chimera:y Search for other PDB entries]
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20T4%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Columba livia</b> (1 PDB entries): <br>
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**<b>Streptococcus phage Cp-1</b> (6 PDB entries): <br>
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***[[1gq2]] <div class="pdb-prints 1gq2"></div>
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***[[2j8g]] <div class="pdb-prints 2j8g"></div>
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***Title: MALIC ENZYME FROM PIGEON LIVER
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***Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)
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***1.69 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Streptococcus%20phage%20Cp-1%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Enterobacteria phage lambda</b> (3 PDB entries): <br>
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***[[1am7]] <div class="pdb-prints 1am7"></div>
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***Title: Lysozyme from bacteriophage lambda
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***2.3 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20lambda%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Enterobacteria phage P1</b> (2 PDB entries): <br>
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***[[1xju]] <div class="pdb-prints 1xju"></div>
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***Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz
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***1.07 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20P1%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Streptococcus phage CP-7</b> (1 PDB entries): <br>
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***[[4cvd]] <div class="pdb-prints 4cvd"></div>
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***Title: Crystal structure of the central repeat of cell wall binding module of Cpl7
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***1.666 A resolution
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*<b>Eukaryota</b> (16 PDB entries): <br>
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**<b>Hevea brasiliensis</b> (7 PDB entries): <br>
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***[[1kqy]] <div class="pdb-prints 1kqy"></div>
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***Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG
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***1.92 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Hevea%20brasiliensis%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Meretrix lusoria</b> (3 PDB entries): <br>
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***[[4pj2]] <div class="pdb-prints 4pj2"></div>
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***Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme
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***1.24 A resolution
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***Other macromolecules also in this entry: Putative exported protein, .
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Meretrix%20lusoria%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Bombyx mori</b> (2 PDB entries): <br>
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***[[1gd6]] <div class="pdb-prints 1gd6"></div>
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***Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME
***2.5 A resolution
***2.5 A resolution
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***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Bombyx%20mori%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries]
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**<b>Mus musculus</b> (1 PDB entries): <br>
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***[[1iak]] <div class="pdb-prints 1iak"></div>
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***Title: HISTOCOMPATIBILITY ANTIGEN I-AK
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***1.9 A resolution
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***Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain.
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*<b>Bacteria</b> (1 PDB entries): <br>
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**<b>Escherichia coli</b> (1 PDB entries): <br>
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***[[2qb0]] <div class="pdb-prints 2qb0"></div>
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***Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.
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***2.56 A resolution
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***Other macromolecules also in this entry: Transcription factor ETV6, .
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[[Category:Topic Page]][[Category:PDBe]]

Revision as of 20:33, 12 September 2015

xml format Viruses Eukaryota Bacteria

Lysozyme

The best structure for Lysozyme shown: 1swy

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Proteopedia Page Contributors and Editors (what is this?)

PDBe, Jaime Prilusky, Michal Harel

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