This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1pz5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==Structural basis of peptide-carbohydrate mimicry in an antibody combining site==
==Structural basis of peptide-carbohydrate mimicry in an antibody combining site==
<StructureSection load='1pz5' size='340' side='right' caption='[[1pz5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='1pz5' size='340' side='right' caption='[[1pz5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
Line 4: Line 5:
<table><tr><td colspan='2'>[[1pz5]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PZ5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1pz5]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1PZ5 FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1m71|1m71]], [[1m7d|1m7d]], [[1m7i|1m7i]]</td></tr>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1m71|1m71]], [[1m7d|1m7d]], [[1m7i|1m7i]]</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pz5 OCA], [http://pdbe.org/1pz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pz5 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pz5 OCA], [http://pdbe.org/1pz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1pz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1pz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1pz5 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 10: Line 11:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pz/1pz5_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pz/1pz5_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pz5 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 26:
</div>
</div>
<div class="pdbe-citations 1pz5" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1pz5" style="background-color:#fffaf0;"></div>
- 
-
==See Also==
 
-
*[[Antibody|Antibody]]
 
== References ==
== References ==
<references/>
<references/>

Revision as of 08:19, 24 February 2018

Structural basis of peptide-carbohydrate mimicry in an antibody combining site

1pz5, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools