5dmp

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m (Protected "5dmp" [edit=sysop:move=sysop])
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'''Unreleased structure'''
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==Structure of the Archaeal NHEJ Phosphoesterase from Methanocella paludicola.==
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<StructureSection load='5dmp' size='340' side='right' caption='[[5dmp]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5dmp]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DMP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DMP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=VN4:OXIDO(DIOXO)VANADIUM'>VN4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dmp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dmp OCA], [http://pdbe.org/5dmp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dmp RCSB], [http://www.ebi.ac.uk/pdbsum/5dmp PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The non-homologous end-joining (NHEJ) pathway repairs DNA double-strand breaks (DSBs) in all domains of life. Archaea and bacteria utilize a conserved set of multifunctional proteins in a pathway termed Archaeo-Prokaryotic (AP) NHEJ that facilitates DSB repair. Archaeal NHEJ polymerases (Pol) are capable of strand displacement synthesis, whilst filling DNA gaps or partially annealed DNA ends, which can give rise to unligatable intermediates. However, an associated NHEJ phosphoesterase (PE) resects these products to ensure that efficient ligation occurs. Here, we describe the crystal structures of these archaeal (Methanocella paludicola) NHEJ nuclease and polymerase enzymes, demonstrating their strict structural conservation with their bacterial NHEJ counterparts. Structural analysis, in conjunction with biochemical studies, has uncovered the molecular basis for DNA strand displacement synthesis in AP-NHEJ, revealing the mechanisms that enable Pol and PE to displace annealed bases to facilitate their respective roles in DSB repair.
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The entry 5dmp is ON HOLD until Paper Publication
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Molecular basis for DNA strand displacement by NHEJ repair polymerases.,Bartlett EJ, Brissett NC, Plocinski P, Carlberg T, Doherty AJ Nucleic Acids Res. 2015 Sep 23. pii: gkv965. PMID:26405198<ref>PMID:26405198</ref>
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Authors: Brissett, N.C., Bartlett, E.J., Doherty, A.J.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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Description: Structure of the Archaeal NHEJ Phosphoesterase from Methanocella paludicola.
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<div class="pdbe-citations 5dmp" style="background-color:#fffaf0;"></div>
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[[Category: Unreleased Structures]]
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== References ==
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[[Category: Brissett, N.C]]
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<references/>
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[[Category: Doherty, A.J]]
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__TOC__
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[[Category: Bartlett, E.J]]
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</StructureSection>
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[[Category: Bartlett, E J]]
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[[Category: Brissett, N C]]
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[[Category: Doherty, A J]]
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[[Category: Archaeal protein]]
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[[Category: Biocatalysis]]
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[[Category: Dna repair enzyme]]
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[[Category: Hydrolase]]
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[[Category: Phosphoric diester hydrolase]]
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[[Category: Phosphoric monoester hydrolase]]

Revision as of 13:45, 7 October 2015

Structure of the Archaeal NHEJ Phosphoesterase from Methanocella paludicola.

5dmp, resolution 1.79Å

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