5dgy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5dgy is ON HOLD until Paper Publication
+
==Crystal structure of rhodopsin bound to visual arrestin==
 +
<StructureSection load='5dgy' size='340' side='right' caption='[[5dgy]], [[Resolution|resolution]] 7.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5dgy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DGY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DGY FirstGlance]. <br>
 +
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4zwj|4zwj]]</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dgy OCA], [http://pdbe.org/5dgy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dgy RCSB], [http://www.ebi.ac.uk/pdbsum/5dgy PDBsum]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4]] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.
-
Authors: Zhou, X.E., Gao, X., Kang, Y., He, Y., de Waal, P.W., Suino-Powell, K.M., Wang, M., Melcher, K., Xu, H.E.
+
X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex.,Zhou XE, Gao X, Barty A, Kang Y, He Y, Liu W, Ishchenko A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Suino-Powell KM, Boutet S, Williams GJ, Wang M, Li D, Caffrey M, Chapman HN, Spence JC, Fromme P, Weierstall U, Stevens RC, Cherezov V, Melcher K, Xu HE Sci Data. 2016 Apr 12;3:160021. doi: 10.1038/sdata.2016.21. PMID:27070998<ref>PMID:27070998</ref>
-
Description: Crystal structure of rhodopsin bound to visual arrestin
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Wang, M]]
+
<div class="pdbe-citations 5dgy" style="background-color:#fffaf0;"></div>
-
[[Category: Zhou, X.E]]
+
== References ==
-
[[Category: Xu, H.E]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Lysozyme]]
 +
[[Category: Gao, X]]
 +
[[Category: He, Y]]
[[Category: Kang, Y]]
[[Category: Kang, Y]]
[[Category: Melcher, K]]
[[Category: Melcher, K]]
-
[[Category: He, Y]]
+
[[Category: Suino-Powell, K M]]
-
[[Category: Gao, X]]
+
[[Category: Waal, P W.de]]
-
[[Category: Suino-Powell, K.M]]
+
[[Category: Wang, M]]
-
[[Category: De Waal, P.W]]
+
[[Category: Xu, H E]]
 +
[[Category: Zhou, X E]]
 +
[[Category: Arrestin]]
 +
[[Category: Gpcr]]
 +
[[Category: Rhodopsin]]
 +
[[Category: Signaling protein]]

Revision as of 16:20, 10 May 2016

Crystal structure of rhodopsin bound to visual arrestin

5dgy, resolution 7.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools