4wvz
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of artificial crosslinked thiol dioxygenase G95C variant from Pseudomonas aeruginosa== | |
+ | <StructureSection load='4wvz' size='340' side='right' caption='[[4wvz]], [[Resolution|resolution]] 2.09Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4wvz]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WVZ FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tlf|4tlf]]</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wvz OCA], [http://pdbe.org/4wvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wvz RCSB], [http://www.ebi.ac.uk/pdbsum/4wvz PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Thiol dioxygenases catalyze the synthesis of sulfinic acids in a range of organisms from bacteria to mammals. A thiol dioxygenase from the bacterium Pseudomonas aeruginosa oxidizes both 3-mercaptopropionic acid and cysteine, with a approximately 70 fold preference for 3-mercaptopropionic acid over all pHs. This substrate reactivity is widened compared to other thiol dioxygenases and was exploited in this investigation of the residues important for activity. A simple model incorporating two protonation events was used to fit profiles of the Michaelis-Menten parameters determined at different pH values for both substrates. The pKs determined using plots of kcat/Km differ at low pH, but not in a way easily attributable to protonation of the substrate alone and share a common value at higher pH. Plots of kcat versus pH are also quite different at low pH showing the monoprotonated ES complexes with 3-mercaptopropionic acid and cysteine have different pKs. At higher pH, kcat decreases sigmoidally with a similar pK regardless of substrate. Loss of reactivity at high pH is attributed to deprotonation of tyrosine 159 and its influence on dioxygen binding. A mechanism is proposed by which deprotonation of tyrosine 159 both blocks oxygen binding and concomitantly promotes cystine formation. Finally, the role of tyrosine 159 was further probed by production of a G95C variant that is able to form a cysteine-tyrosine crosslink homologous to that found in mammalian cysteine dioxygenases. Activity of this variant is severely impaired. Crystallography shows that when un-crosslinked, the cysteine thiol excludes tyrosine 159 from its native position, while kinetic analysis shows that the thioether bond impairs reactivity of the crosslinked form. | ||
- | + | Substrate and pH-Dependent Kinetic Profile of 3-Mercaptopropionate Dioxygenase from Pseudomonas aeruginosa.,Fellner M, Aloi S, Tchesnokov EP, Wilbanks SM, Jameson GN Biochemistry. 2016 Feb 25. PMID:26878277<ref>PMID:26878277</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 4wvz" style="background-color:#fffaf0;"></div> |
- | [[Category: Tchesnokov, E | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
+ | </StructureSection> | ||
+ | [[Category: FELLNER, M]] | ||
+ | [[Category: Jameson, G N.L]] | ||
+ | [[Category: Tchesnokov, E P]] | ||
+ | [[Category: Wilbanks, S M]] | ||
+ | [[Category: 3-mercaptopropionic acid]] | ||
+ | [[Category: 3-mpa dioxygenase]] | ||
+ | [[Category: Beta barrel]] | ||
+ | [[Category: Crosslink]] | ||
+ | [[Category: Cupin]] | ||
+ | [[Category: Cysteine dioxygenase]] | ||
+ | [[Category: Non-heme mono-iron]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Pseudomonas aeruginosa]] | ||
+ | [[Category: Thiol dioxygenase]] |
Revision as of 18:12, 26 February 2016
Crystal structure of artificial crosslinked thiol dioxygenase G95C variant from Pseudomonas aeruginosa
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