Sandbox Reserved 1133
From Proteopedia
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== Structure == | == Structure == | ||
- | This gene is located on the chromosome 2 at the location: 2q37.3 (genomic coordinates: 2:241,849,880-241,858,907)<ref>http://www.genome.jp/dbget-bin/www_bget?hsa+5133 | + | This gene is located on the chromosome 2 at the location: 2q37.3 (genomic coordinates: 2:241,849,880-241,858,907)<ref>http://www.genome.jp/dbget-bin/www_bget?hsa+5133</ref>. |
- | It measured 2106 bp and possessed 5 exons<ref>http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9606&build=current&advsrch=off&query=PDCD1 | + | It measured 2106 bp and possessed 5 exons<ref>http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9606&build=current&advsrch=off&query=PDCD1</ref>.[http://www.ensembl.org/Homo_sapiens/Location/View?db=core;g=ENSG00000276977;r=CHR_HSCHR2_3_CTG15:241849881-241858908;t=ENST00000618185] |
<br/>The PD-1 predicted protein possessed 288 amino acid.[http://www.uniprot.org/uniprot/Q15116#showFeatures] | <br/>The PD-1 predicted protein possessed 288 amino acid.[http://www.uniprot.org/uniprot/Q15116#showFeatures] | ||
The PD-1 structure included an <scene name='71/719874/Extracellular_domain_of_pd-1/1'>extracellular IgV domain</scene>, a transmembrane region and an intracellular tail. | The PD-1 structure included an <scene name='71/719874/Extracellular_domain_of_pd-1/1'>extracellular IgV domain</scene>, a transmembrane region and an intracellular tail. | ||
- | This tail comported two phosphorylation site located in an immunoreceptor tyrosine based inhibitory motif and an immunoreceptor tyrosine-based switch motif<ref>http://www.uniprot.org/uniprot/Q15116 | + | This tail comported two phosphorylation site located in an immunoreceptor tyrosine based inhibitory motif and an immunoreceptor tyrosine-based switch motif<ref>http://www.uniprot.org/uniprot/Q15116</ref>. |
That suggests that PD-1 negatively regulates T cells receptor signals. | That suggests that PD-1 negatively regulates T cells receptor signals. | ||
It is agreeing with binding of Tyrosine-protein phosphatase non-receptor type 6 (SHP-1) and Tyrosine-protein phosphatase non-receptor type 11 (SHP-2) to the cytoplasmic tail of PD-1 after ligand binding. | It is agreeing with binding of Tyrosine-protein phosphatase non-receptor type 6 (SHP-1) and Tyrosine-protein phosphatase non-receptor type 11 (SHP-2) to the cytoplasmic tail of PD-1 after ligand binding. | ||
- | PD-1 ligation up-regulates E3-ubiquitin ligases CBL-b and c-CBL that trigger T cell receptor down-modulation<ref>https://en.wikipedia.org/wiki/Programmed_cell_death_1 | + | PD-1 ligation up-regulates E3-ubiquitin ligases CBL-b and c-CBL that trigger T cell receptor down-modulation<ref>https://en.wikipedia.org/wiki/Programmed_cell_death_1</ref>. |
== Inhibitor == | == Inhibitor == | ||
The PD-1 protein is an inhibitory of the immune response by T cells when it interacts with its ligands PD-L1 and PD-L2. | The PD-1 protein is an inhibitory of the immune response by T cells when it interacts with its ligands PD-L1 and PD-L2. | ||
- | These ligands belong to the B7 family<ref>http://jem.rupress.org/content/192/7/1027.long | + | These ligands belong to the B7 family<ref>http://jem.rupress.org/content/192/7/1027.long</ref>.PD-L1 is up-regulated when macrophage or dendritic cells are in contact with LPS or during a Granulocyte-macrophage colony-stimulating factor (GM-CSF) treatment. |
PD-L1 is also up-regulated on T cells and B cells upon TCR and B cell receptor signalling. | PD-L1 is also up-regulated on T cells and B cells upon TCR and B cell receptor signalling. | ||
When PD1 is inhibits it upregulated a lot of genes in CD8-positive T cells. | When PD1 is inhibits it upregulated a lot of genes in CD8-positive T cells. | ||
- | These gene activation provokes an upregulation of the transcription factor BATF. The high expression of BATF impairs cell proliferation and cytokine secretion whereas BATF reduces PD1 inhibition<ref>http://omim.org/entry/600244#8 | + | These gene activation provokes an upregulation of the transcription factor BATF. The high expression of BATF impairs cell proliferation and cytokine secretion whereas BATF reduces PD1 inhibition<ref>http://omim.org/entry/600244#8</ref>. |
<br/>PD-L2 expression is rarest than PD-L1 expression. | <br/>PD-L2 expression is rarest than PD-L1 expression. | ||
- | This ligand is expressed by DCs and a few tumors. The binding of PDL2 provokes an inhibition of T cells proliferation and cytokine production<ref>http://jem.rupress.org/content/192/7/1027.long | + | This ligand is expressed by DCs and a few tumors. The binding of PDL2 provokes an inhibition of T cells proliferation and cytokine production<ref>http://jem.rupress.org/content/192/7/1027.long</ref>. |
== Pathologies and clinical applications == | == Pathologies and clinical applications == |
Revision as of 17:00, 30 January 2016
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