This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2oo6
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of putative L-alanine-DL-glutamate epimerase from Burkholderia xenovorans strain LB400== | ==Crystal structure of putative L-alanine-DL-glutamate epimerase from Burkholderia xenovorans strain LB400== | ||
<StructureSection load='2oo6' size='340' side='right' caption='[[2oo6]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='2oo6' size='340' side='right' caption='[[2oo6]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2oo6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2oo6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_cepacia_lb400 Burkholderia cepacia lb400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OO6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OO6 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bxeno_B1104, Bxe_B1897 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bxeno_B1104, Bxe_B1897 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 Burkholderia cepacia LB400])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oo6 OCA], [http://pdbe.org/2oo6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oo6 RCSB], [http://www.ebi.ac.uk/pdbsum/2oo6 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oo6 OCA], [http://pdbe.org/2oo6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oo6 RCSB], [http://www.ebi.ac.uk/pdbsum/2oo6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2oo6 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 11: | Line 12: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2oo6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2oo6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 19: | Line 20: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Burkholderia cepacia lb400]] |
[[Category: Almo, S C]] | [[Category: Almo, S C]] | ||
[[Category: Atwell, S]] | [[Category: Atwell, S]] | ||
Revision as of 07:23, 22 August 2018
Crystal structure of putative L-alanine-DL-glutamate epimerase from Burkholderia xenovorans strain LB400
| |||||||||||
Categories: Burkholderia cepacia lb400 | Almo, S C | Atwell, S | Bain, K T | Bonanno, J B | Burley, S K | Dickey, M | Freeman, J | Structural genomic | Sauder, J M | Smyth, L | Sridhar, V | Wu, B | Enolase | Isomerase | NYSGXRC, New York SGX Research Center for Structural Genomics | PSI, Protein structure initiative
