1d54
From Proteopedia
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[[Image:1d54.jpg|left|200px]] | [[Image:1d54.jpg|left|200px]] | ||
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| - | + | {{STRUCTURE_1d54| PDB=1d54 | SCENE= }} | |
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'''ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN''' | '''ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN''' | ||
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==About this Structure== | ==About this Structure== | ||
| - | + | Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D54 OCA]. | |
==Reference== | ==Reference== | ||
Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin., Leonard GA, Brown T, Hunter WN, Eur J Biochem. 1992 Feb 15;204(1):69-74. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1740157 1740157] | Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin., Leonard GA, Brown T, Hunter WN, Eur J Biochem. 1992 Feb 15;204(1):69-74. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1740157 1740157] | ||
| - | [[Category: Protein complex]] | ||
[[Category: Brown, T.]] | [[Category: Brown, T.]] | ||
[[Category: Hunter, W N.]] | [[Category: Hunter, W N.]] | ||
[[Category: Leonard, G A.]] | [[Category: Leonard, G A.]] | ||
| - | [[Category: | + | [[Category: Complexed with drug]] |
| - | [[Category: | + | [[Category: Double helix]] |
| - | [[Category: | + | [[Category: Right handed dna]] |
| - | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 13:27:51 2008'' | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | |
Revision as of 10:27, 2 May 2008
ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN
Overview
Crystallographic methods have been applied to determine the high-resolution structure of the complex formed between the self-complementary oligonucleotide d(TGTACA) and the anthracycline antibiotic 4'-epiadriamycin. The complex crystallises in the tetragonal system, space group P4(1)2(1)2 with a = 2.802 nm and c = 5.293 nm, and an asymmetric unit consisting of a single DNA strand, one drug molecule and 34 solvent molecules. The refinement converged with an R factor of 0.17 for the 2381 reflections with F greater than or equal to 3 sigma F in the resolution range 0.70-0.14 nm. Two asymmetric units associate such that a distorted B-DNA-type hexanucleotide duplex is formed incorporating two drug molecules that are intercalated at the TpG steps. The amino sugar of 4'-epiadriamycin binds in the minor groove of the duplex and displays different interactions from those observed in previously determined structures. Interactions between the hydrophilic groups of the amino sugar and the oligonucleotide are all mediated by solvent molecules. Ultraviolet melting measurements and comparison with other anthracycline-DNA complexes suggest that these indirect interactions have a powerful stabilising effect on the complex.
About this Structure
Full crystallographic information is available from OCA.
Reference
Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin., Leonard GA, Brown T, Hunter WN, Eur J Biochem. 1992 Feb 15;204(1):69-74. PMID:1740157 Page seeded by OCA on Fri May 2 13:27:51 2008
