This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ib6
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus== | ==Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus== | ||
<StructureSection load='2ib6' size='340' side='right' caption='[[2ib6]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='2ib6' size='340' side='right' caption='[[2ib6]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
| Line 6: | Line 7: | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=QLG:[(4Z)-2-[(1Z)-4-AMINO-4-OXOBUTANIMIDOYL]-4-(2-METHYLPROPYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>QLG</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=QLG:[(4Z)-2-[(1Z)-4-AMINO-4-OXOBUTANIMIDOYL]-4-(2-METHYLPROPYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>QLG</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mou|1mou]], [[1uis|1uis]], [[1g7k|1g7k]], [[1ema|1ema]], [[1xmz|1xmz]], [[2ib5|2ib5]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mou|1mou]], [[1uis|1uis]], [[1g7k|1g7k]], [[1ema|1ema]], [[1xmz|1xmz]], [[2ib5|2ib5]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ib6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ib6 OCA], [http://pdbe.org/2ib6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ib6 RCSB], [http://www.ebi.ac.uk/pdbsum/2ib6 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ib6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ib6 OCA], [http://pdbe.org/2ib6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ib6 RCSB], [http://www.ebi.ac.uk/pdbsum/2ib6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ib6 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 12: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ib6_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ib6_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Revision as of 08:31, 4 July 2018
Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
| |||||||||||
Categories: Bosanac, I | Chan, M C.Y | Ho, D | Ikura, M | Prive, G | Alpha helix | Beta barrel | Chromophore | Chromoprotein | Gfp-like protein | Luminescent protein | Yellow

