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2zfl

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Revision as of 21:41, 15 November 2017

Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-3

Structural highlights

2zfl is a 1 chain structure with sequence from Lk3 transgenic mice. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Related:	1vfv, 1vfw, 1vfx, 1vfz, 1i6i, 1i5s, 2zfi, 2zfj, 2zfk, 2zfm
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[KIF1A_MOUSE] Motor for anterograde axonal transport of synaptic vesicle precursors.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Mg-ADP release is considered to be a crucial process for the regulation and motility of kinesin. To gain insight into the structural basis of this process, we solved the atomic structures of kinesin superfamily protein-1A (KIF1A) during and after Mg(2+) release. On the basis of new structural and mutagenesis data, we propose a model mechanism for microtubule activation of Mg-ADP release from KIF1A. In our model, a specific interaction between loop L7 of KIF1A and beta-tubulin reconfigures the KIF1A active site by shifting the relative positions of switches I and II. This leads to the sequential release of a group of water molecules that sits over the Mg(2+) in the active site, followed by Mg(2+) and finally the ADP. We further propose that this set of events is linked to a strain-dependent docking of the neck linker to the motor core, which produces a two-step power stroke.

Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin.,Nitta R, Okada Y, Hirokawa N Nat Struct Mol Biol. 2008 Oct;15(10):1067-75. Epub 2008 Sep 21. PMID:18806800^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Nitta R, Okada Y, Hirokawa N. Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin. Nat Struct Mol Biol. 2008 Oct;15(10):1067-75. Epub 2008 Sep 21. PMID:18806800 doi:10.1038/nsmb.1487

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zfl"

@@ Line 1: / Line 1: @@
 ==Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-3==
 <StructureSection load='2zfl' size='340' side='right' caption='[[2zfl]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
@@ Line 5: / Line 6: @@
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1vfv|1vfv]], [[1vfw|1vfw]], [[1vfx|1vfx]], [[1vfz|1vfz]], [[1i6i|1i6i]], [[1i5s|1i5s]], [[2zfi|2zfi]], [[2zfj|2zfj]], [[2zfk|2zfk]], [[2zfm|2zfm]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zfl OCA], [http://pdbe.org/2zfl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zfl RCSB], [http://www.ebi.ac.uk/pdbsum/2zfl PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zfl OCA], [http://pdbe.org/2zfl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zfl RCSB], [http://www.ebi.ac.uk/pdbsum/2zfl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zfl ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 28: / Line 29: @@
 </div>
 <div class="pdbe-citations 2zfl" style="background-color:#fffaf0;"></div>
-==See Also==
-*[[Kinesin|Kinesin]]
 == References ==
 <references/>
@@ Line 42: / Line 40: @@
 [[Category: Atp-binding]]
 [[Category: Atpase]]
+[[Category: Coiled coil]]
 [[Category: Enzyme]]
 [[Category: Kinesin]]

2zfl

From Proteopedia

Revision as of 21:41, 15 November 2017

Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-3

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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