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2j1u
From Proteopedia
(Difference between revisions)
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| - | == | + | |
| + | ==Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide== | ||
<StructureSection load='2j1u' size='340' side='right' caption='[[2j1u]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='2j1u' size='340' side='right' caption='[[2j1u]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2j1u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. The December 2012 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''ABO Blood Type Glycosyltransferases'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2012_12 10.2210/rcsb_pdb/mom_2012_12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J1U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J1U FirstGlance]. <br> | <table><tr><td colspan='2'>[[2j1u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. The December 2012 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''ABO Blood Type Glycosyltransferases'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2012_12 10.2210/rcsb_pdb/mom_2012_12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J1U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2J1U FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand= | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr> |
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2j1r|2j1r]], [[2j1s|2j1s]], [[2j1t|2j1t]], [[2j1v|2j1v]], [[2j22|2j22]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2j1r|2j1r]], [[2j1s|2j1s]], [[2j1t|2j1t]], [[2j1v|2j1v]], [[2j22|2j22]]</td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j1u OCA], [http://pdbe.org/2j1u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j1u RCSB], [http://www.ebi.ac.uk/pdbsum/2j1u PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2j1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j1u OCA], [http://pdbe.org/2j1u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j1u RCSB], [http://www.ebi.ac.uk/pdbsum/2j1u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2j1u ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/2j1u_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/2j1u_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Revision as of 06:29, 11 July 2018
Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide
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