This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1ybf
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482== | ==Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482== | ||
<StructureSection load='1ybf' size='340' side='right' caption='[[1ybf]], [[Resolution|resolution]] 2.90Å' scene=''> | <StructureSection load='1ybf' size='340' side='right' caption='[[1ybf]], [[Resolution|resolution]] 2.90Å' scene=''> | ||
| Line 4: | Line 5: | ||
<table><tr><td colspan='2'>[[1ybf]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBF FirstGlance]. <br> | <table><tr><td colspan='2'>[[1ybf]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBF FirstGlance]. <br> | ||
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybf OCA], [http://pdbe.org/1ybf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybf RCSB], [http://www.ebi.ac.uk/pdbsum/1ybf PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1ybf TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybf OCA], [http://pdbe.org/1ybf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybf RCSB], [http://www.ebi.ac.uk/pdbsum/1ybf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybf ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1ybf TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 10: | Line 11: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybf_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybf_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Revision as of 07:08, 25 April 2018
Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482
| |||||||||||
