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1xj1

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Revision as of 07:38, 18 April 2018

3D solution structure of the C-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product

Structural highlights

1xj1 is a 1 chain structure with sequence from Csiv. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	1x17
Gene:	pVX900 (CSIV)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Polydnaviruses are an unusual group of insect viruses that have an obligate symbiotic association with certain parasitic wasps. These viruses are transmitted with the wasp egg during oviposition into lepidopteran insects, enabling the survival and development of the egg inside the host larvae. We report the three-dimensional structure of a novel polydnaviral cysteine-rich motif (cys-motif), identified as the carboxyl-terminal domain of a two cys-motif containing polydnaviral VHv1.1 gene product, abbreviated "C-term VHv1.1". This 65-residue domain was identified experimentally by limited proteolysis of the full-length protein and was subsequently cloned in a bacterial expression system for NMR studies. The C-term VHv1.1 3D structure was determined in solution by two-dimensional (1)H NMR spectroscopy. Calculation of the structure was based on a total of 300 upper distance restraints and 20 dihedral angle constraints, and resulted in an ensemble of 25 representative conformers with an average rmsd of 0.47 A from the mean structure for core backbone atoms. The protein core is made of a four beta-strand scaffold held together in a compact structure by three disulfide bonds, which form a cystine knot. The four beta-strands are arranged in an unusual configuration to form a triple-stranded beta-sheet and double-stranded beta-sheet. Comparison with other classes of cystine knots provides indication that C-term VHv1.1 represents a new and distinct cystine knot motif. This analysis provides a structural basis for interpretation of the genetic and amino acid sequence data classifying polydnavirus gene products as members of cysteine-rich protein families.

Solution structure of the carboxyl-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product: comparison with other cystine knot structural folds.,Einerwold J, Jaseja M, Hapner K, Webb B, Copie V Biochemistry. 2001 Dec 4;40(48):14404-12. PMID:11724552^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Einerwold J, Jaseja M, Hapner K, Webb B, Copie V. Solution structure of the carboxyl-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product: comparison with other cystine knot structural folds. Biochemistry. 2001 Dec 4;40(48):14404-12. PMID:11724552

1 Structural highlights
2 Evolutionary Conservation
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xj1"

@@ Line 1: / Line 1: @@
 ==3D solution structure of the C-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product==
 <StructureSection load='1xj1' size='340' side='right' caption='[[1xj1]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''>
@@ Line 5: / Line 6: @@
 </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x17|1x17]]</td></tr>
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pVX900 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10484 CSIV])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj1 OCA], [http://pdbe.org/1xj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj1 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj1 OCA], [http://pdbe.org/1xj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj1 ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 11: / Line 12: @@
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj1_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj1_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>

1xj1

From Proteopedia

Revision as of 07:38, 18 April 2018

3D solution structure of the C-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product

Structural highlights

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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