We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Sandbox Reserved 1165

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 21:51, 22 March 2016

[[Image:]]

This Sandbox is Reserved from Jan 11 through August 12, 2016 for use in the course CH462 Central Metabolism taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1160 through Sandbox Reserved 1184.

To get started:

Click the edit this page tab at the top. Save the page after each step, then edit it again.
Click the 3D button (when editing, above the wikitext box) to insert Jmol.
show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Human Glucagon Class B G Protein-Coupled Receptors (GPCRs)

Introduction

, also known as secretin-like receptors, are a subfamily of the more well known class A (rhodopsin-like) glucagon receptor family^[1] . Located in the liver, class B glucagon receptors (GCGRs) are activated by the binding of the hormonal peptide glucagon which leads to the release of glucose into the bloodstream and plays an essential role in glucose homeostasis. Class B GCGRs are composed of a seven transmembrane domain (7TM) and extracellular domain (ECD) that are of vital importance in glucagon binding. In comparison, class A vs. class B glucagon receptors share less than fifteen percent sequence homology, but both share this 7TM which is a primary area of comparison between the two ^[1].

Structures of Class A vs. Class B GPCRs

Comparison of the 7TM of class B GCGRs was compared to that of class A, and it was found that the orientation and positioning of the alpha helices are conserved through both classes. But, structural alignments of the two revealed multiple gaps in the transmembrane region signifying a variety of structural deviations in transmembrane helices ^[2]. The N-terminal end of helix one in class B GCGR, located in the 7TM, is longer than any known class A GPCR structure and stretches three supplementary helical turns above the extracellular (EC) membrane boundary. This region is referred to as the stalk and is involved in glucagon binding and helps in defining the orientation of the ECD with respect to the 7TM domain ^[2]. Also specific to class B GPCRs, a glycine residue at position 393 induces a bend in helix VII; this bend is stabilized by the hydrophobic interaction between the glycine 393 and phenylalanine 184. One of the most distinguishable characteristics of the class B 7TM is the helix VIII tilt of 25 degrees compared to that of class A, which has no tilt. This results from a Glu 406 in helix VIII that is fully conserved in secretin-like receptors and forms two interhelical salt bridges with conserved residues Arg 173 and Arg 346 ^[2]. Despite these differences, a vital region that is conserved in both class B and class A receptors is the disulphide bond between Cys 294 and Cys 224 in ECL2. This bond stabilizes the receptors entire 7TM fold. Lastly, the locations of the extracellular tips for class B glucagon receptors allow for a much wider and deeper binding cavity in the ligand-binding pocket, which is much more immense than any of the class A GCGRs ^[2]. These wide ranges specifically occur between alpha helices two and six (green) and three and seven (red).

How These Structures Lead to Function

Structurally, the N-terminal extracellular domain (ECD) and the 7TM comprise the signature seven helical structure that is involved in signaling via coupling to heterotrimeric G proteins that activate adenylate cyclase to increase the levels of intracellular cyclic AMP. Additionally, this coupling increases inositol phosphate and intracellular calcium levels ^[2]. The wider and deeper ligand-binding pocket of class B GPCRs allows for a vast array of receptors to be bound that allow for numerous functions activated by peptide receptors ^[3]. The conformation and orientation of the 7TM and the ECD regions dictate the functionality of the protein, which has an open and closed conformation of the GCGR. When glucagon binds to GCGR, the open conformation of GCGR is stabilized. There is no clear binding site location of the hormone peptide ligand, but they do know the N-terminus of glucagon binds deep into the binding pocket. The amino acids at the N-terminus have the ability to form hydrogen bonds and ionic interactions involved. Here is the amino acid sequence of glucagon ^[4].

Image:Amino Acid Sequence.jpg

Many of the residues that are in direct contact with the glucagon molecule are charged or are polar. There are also many smaller residues on glucagon that support the bulky residues on the GCGR. These residues are located within the binding pocket of the 7TM ^[3]. There are specific amino acid interactions that hold the helices of the 7TM in the closed conformation that maximizes affinity. This includes a disulfide bond between Cys 294 and Cys 224 that serves to hold the ECL1 and ECL2 in the proper orientation. Additionally, the salt bridges between Glu 406, Arg 173, and Arg 346 mentioned earlier hold the conformation together for higher affinity. Finally, alpha helical structure of the stalk is imperative to the affinity and binding of the glucagon ^[2].

Clinical Relevancy

Of the fifteen human class B GPCRs, eight have been identified as potential drug target^[5]. Therapeutic agents have been created from the peptides themselves within this protein, but overall pharmaceutical companies have had difficulty creating agents that act on family B GPCRS. There is an outward appearance and inherent flexibility in the class B GCGR 7TM because of conserved hydrogen bonds that flank a glycine residue, and this structure along with the ECD and its role of interactions on the extracellular side of receptors may provide evidence to how class B receptors adjust its conformational spectra for various receptors. Researchers hope to show how these conformations can be utilized in potential treatments of a wide array disorders. Research for class B GCGR inhibitors is primarily looking into allosteric inhibitors having the ability to target specific receptors in order to treat problems like stress disorders, managing excess glucose in the bloodstream, and also alternative mechanisms for treating migraines ^[6]. Known inhibitors include monoclonal antibodies which inhibit GCGR through an allosteric mechanism. The monoclonal antibodies bind to two different sites, the ECD opposite of the binding region and then the helical portion of the ECD as well. These antibodies did not interact with the binding sites, but overall this inhibitor shows further proof of the importance the ECD is to the function of human class B GCGRs ^[7].

References

↑ ^1.0 ^1.1 Hollenstein K, de Graaf C, Bortolato A, Wang MW, Marshall FH, Stevens RC. Insights into the structure of class B GPCRs. Trends Pharmacol Sci. 2014 Jan;35(1):12-22. doi: 10.1016/j.tips.2013.11.001. Epub, 2013 Dec 18. PMID:24359917 doi:http://dx.doi.org/10.1016/j.tips.2013.11.001
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 Siu FY, He M, de Graaf C, Han GW, Yang D, Zhang Z, Zhou C, Xu Q, Wacker D, Joseph JS, Liu W, Lau J, Cherezov V, Katritch V, Wang MW, Stevens RC. Structure of the human glucagon class B G-protein-coupled receptor. Nature. 2013 Jul 25;499(7459):444-9. doi: 10.1038/nature12393. Epub 2013 Jul 17. PMID:23863937 doi:10.1038/nature12393
↑ ^3.0 ^3.1 Miller LJ, Dong M, Harikumar KG. Ligand binding and activation of the secretin receptor, a prototypic family B G protein-coupled receptor. Br J Pharmacol. 2012 May;166(1):18-26. doi: 10.1111/j.1476-5381.2011.01463.x. PMID:21542831 doi:http://dx.doi.org/10.1111/j.1476-5381.2011.01463.x
↑ Thomsen J, Kristiansen K, Brunfeldt K, Sundby F. The amino acid sequence of human glucagon. FEBS Lett. 1972 Apr 1;21(3):315-319. PMID:11946536
↑ Bortolato A, Dore AS, Hollenstein K, Tehan BG, Mason JS, Marshall FH. Structure of Class B GPCRs: new horizons for drug discovery. Br J Pharmacol. 2014 Jul;171(13):3132-45. doi: 10.1111/bph.12689. PMID:24628305 doi:http://dx.doi.org/10.1111/bph.12689
↑ Mukund S, Shang Y, Clarke HJ, Madjidi A, Corn JE, Kates L, Kolumam G, Chiang V, Luis E, Murray J, Zhang Y, Hotzel I, Koth CM, Allan BB. Inhibitory mechanism of an allosteric antibody targeting the glucagon receptor. J Biol Chem. 2013 Nov 4. PMID:24189067 doi:http://dx.doi.org/10.1074/jbc.M113.496984
↑ Hoare SR. Allosteric modulators of class B G-protein-coupled receptors. Curr Neuropharmacol. 2007 Sep;5(3):168-79. doi: 10.2174/157015907781695928. PMID:19305799 doi:http://dx.doi.org/10.2174/157015907781695928

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1165"

@@ Line 16: / Line 16: @@
 ==How These Structures Lead to Function==
-Structurally, the [https://en.wikipedia.org/wiki/N-terminus N-terminal] extracellular domain (ECD) and the 7TM comprise the signature seven helical structure that is involved in [https://en.wikibooks.org/wiki/Principles_of_Biochemistry/Signaling_inside_the_Cell signaling] via [https://en.wikibooks.org/wiki/Structural_Biochemistry/Energy_coupling_in_chemical_reactions coupling] to [https://en.wikipedia.org/wiki/Heterotrimeric_G_protein heterotrimeric G proteins] that activate [https://en.wikipedia.org/wiki/Adenylyl_cyclase adenylate cyclase] to increase the levels of intracellular [https://en.wikipedia.org/wiki/Cyclic_adenosine_monophosphate cyclic AMP]. Additionally, this coupling increases [https://en.wikipedia.org/wiki/Inositol_phosphate inositol phosphate] and intracellular [https://en.wikipedia.org/wiki/Calcium calcium] levels  <ref name="Tips">PMID: 23863937</ref>. The wider and deeper ligand-binding pocket of class B GPCRs allows for a vast array of [https://en.wikipedia.org/wiki/Receptor_(biochemistry) receptors] to be bound that allow for numerous functions activated by peptide receptors <ref name="Ligands">PMID: 21542831</ref>. The conformation and orientation of the 7TM and the ECD regions dictate the functionality of the protein.There is an open and closed [https://en.wikipedia.org/wiki/Conformation conformation] of the GCGR. When glucagon binds to GCGR, the open conformation of GCGR is stabilized. There is no clear binding site location of the hormone peptide ligand. They do know the N-terminus of glucagon binds deep into the binding pocket. The [https://en.wikipedia.org/wiki/Amino_acid amino acids] at the N-terminus have the ability to form [https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bonds] and [https://en.wikipedia.org/wiki/Ionic_bonding ionic interactions]. Here is the [https://en.wikipedia.org/wiki/Peptide_sequence amino acid sequence] of glucagon <ref name="Sequence">PMID: 11946536</ref>.
+Structurally, the [https://en.wikipedia.org/wiki/N-terminus N-terminal] extracellular domain (ECD) and the 7TM comprise the signature seven helical structure that is involved in [https://en.wikibooks.org/wiki/Principles_of_Biochemistry/Signaling_inside_the_Cell signaling] via [https://en.wikibooks.org/wiki/Structural_Biochemistry/Energy_coupling_in_chemical_reactions coupling] to [https://en.wikipedia.org/wiki/Heterotrimeric_G_protein heterotrimeric G proteins] that activate [https://en.wikipedia.org/wiki/Adenylyl_cyclase adenylate cyclase] to increase the levels of intracellular [https://en.wikipedia.org/wiki/Cyclic_adenosine_monophosphate cyclic AMP]. Additionally, this coupling increases [https://en.wikipedia.org/wiki/Inositol_phosphate inositol phosphate] and intracellular [https://en.wikipedia.org/wiki/Calcium calcium] levels  <ref name="Tips">PMID: 23863937</ref>. The wider and deeper ligand-binding pocket of class B GPCRs allows for a vast array of [https://en.wikipedia.org/wiki/Receptor_(biochemistry) receptors] to be bound that allow for numerous functions activated by peptide receptors <ref name="Ligands">PMID: 21542831</ref>. The conformation and orientation of the 7TM and the ECD regions dictate the functionality of the protein, which has an open and closed [https://en.wikipedia.org/wiki/Conformation conformation] of the GCGR. When glucagon binds to GCGR, the open conformation of GCGR is stabilized. There is no clear binding site location of the hormone peptide ligand, but they do know the N-terminus of glucagon binds deep into the binding pocket. The [https://en.wikipedia.org/wiki/Amino_acid amino acids] at the N-terminus have the ability to form [https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bonds] and [https://en.wikipedia.org/wiki/Ionic_bonding ionic interactions] involved. Here is the [https://en.wikipedia.org/wiki/Peptide_sequence amino acid sequence] of glucagon <ref name="Sequence">PMID: 11946536</ref>.
@@ Line 23: / Line 23: @@
 Many of the [https://en.wikipedia.org/wiki/Residue_(chemistry) residues] that are in direct contact with the glucagon molecule are [https://en.wikipedia.org/wiki/Ion charged] or are [https://en.wikipedia.org/wiki/Chemical_polarity polar].
-There are also many bulk residues on glucagon that support the bulky residues on the GCGR. These residues are located within the binding pocket of the 7TM <ref name="Ligands">PMID: 21542831</ref>. There are specific amino acid interactions that hold the helices of the 7TM in the conformation that maximizes [http://www.chemicool.com/definition/affinity.html affinity], this includes a disulfide bond between Cys 294 and Cys 224 that serves to hold the ECL1 and ECL2 in the proper orientation. Also, the salt bridges between Glu 406, Arg 173, and Arg 346 that hold the conformation of affinity. Alpha helical structure of the stalk is imperative to the affinity and binding of the glucagon <ref name="Tips">PMID: 23863937</ref>.
+There are also many smaller residues on glucagon that support the bulky residues on the GCGR. These residues are located within the binding pocket of the 7TM <ref name="Ligands">PMID: 21542831</ref>. There are specific amino acid interactions that hold the helices of the 7TM in the closed conformation that maximizes [http://www.chemicool.com/definition/affinity.html affinity]. This includes a disulfide bond between Cys 294 and Cys 224 that serves to hold the ECL1 and ECL2 in the proper orientation. Additionally, the salt bridges between Glu 406, Arg 173, and Arg 346 mentioned earlier hold the conformation together for higher affinity. Finally, alpha helical structure of the stalk is imperative to the affinity and binding of the glucagon <ref name="Tips">PMID: 23863937</ref>.
@@ Line 31: / Line 31: @@
 </StructureSection>
 ==Clinical Relevancy==
-Of the fifteen human class B GPCRs, eight have been identified as potential [https://en.wikipedia.org/wiki/Biological_target drug target]<ref name="Drug">PMID: 24628305</ref>. [http://www.wisegeek.com/what-are-therapeutic-agents.htm Therapeutic agents] have been created from the peptides themselves within this protein, but overall [https://en.wikipedia.org/wiki/Pharmaceutical_industry pharmaceutical companies] have had difficulty creating agents that act on family B GPCRS. There is an outward appearance and inherent flexibility in the class B GCGR 7TM because of conserved hydrogen bonds that flank a [https://en.wikipedia.org/wiki/Glycine glycine] residue, and this structure along with the ECD and its role of interactions on the extracellular side of receptors may provide evidence to how class B receptors adjust its conformational spectra for various receptors. Researchers hope to show how these conformations can be utilized in potential treatments of a wide array [https://en.wikipedia.org/wiki/List_of_mental_disorders disorders]. Research for class B GCGR [https://en.wikipedia.org/wiki/Enzyme_inhibitor inhibitors] is primarily looking into [https://en.wikipedia.org/wiki/Allosteric_regulation allosteric inhibitors] having the ability to target specific receptors in order to treat things like stress disorders, managing excess glucose in the bloodstream, and also alternative mechanisms for treating [https://en.wikipedia.org/wiki/Migraine migraines] <ref name="Inhibitors">PMID: 24189067</ref>. Known inhibitors include [https://en.wikipedia.org/wiki/Monoclonal_antibody monoclonal antibodies] which inhibit GCGR through an allosteric mechanism. The monoclonal antibodies bind to two different sites, the ECD opposite of the binding region and then the helical portion of the ECD as well. But, these antibodies did not interact with the binding sites. This inhibitor shows further prove of importance that the ECD is to the function of GCGR <ref name="Last">PMID: 19305799</ref>.
+Of the fifteen human class B GPCRs, eight have been identified as potential [https://en.wikipedia.org/wiki/Biological_target drug target]<ref name="Drug">PMID: 24628305</ref>. [http://www.wisegeek.com/what-are-therapeutic-agents.htm Therapeutic agents] have been created from the peptides themselves within this protein, but overall [https://en.wikipedia.org/wiki/Pharmaceutical_industry pharmaceutical companies] have had difficulty creating agents that act on family B GPCRS. There is an outward appearance and inherent flexibility in the class B GCGR 7TM because of conserved hydrogen bonds that flank a [https://en.wikipedia.org/wiki/Glycine glycine] residue, and this structure along with the ECD and its role of interactions on the extracellular side of receptors may provide evidence to how class B receptors adjust its conformational spectra for various receptors. Researchers hope to show how these conformations can be utilized in potential treatments of a wide array [https://en.wikipedia.org/wiki/List_of_mental_disorders disorders]. Research for class B GCGR [https://en.wikipedia.org/wiki/Enzyme_inhibitor inhibitors] is primarily looking into [https://en.wikipedia.org/wiki/Allosteric_regulation allosteric inhibitors] having the ability to target specific receptors in order to treat problems like stress disorders, managing excess glucose in the bloodstream, and also alternative mechanisms for treating [https://en.wikipedia.org/wiki/Migraine migraines] <ref name="Inhibitors">PMID: 24189067</ref>. Known inhibitors include [https://en.wikipedia.org/wiki/Monoclonal_antibody monoclonal antibodies] which inhibit GCGR through an allosteric mechanism. The monoclonal antibodies bind to two different sites, the ECD opposite of the binding region and then the helical portion of the ECD as well. These antibodies did not interact with the binding sites, but overall this inhibitor shows further proof of the importance the ECD is to the function of  human class B GCGRs <ref name="Last">PMID: 19305799</ref>.
 == References ==
 <references/>

Sandbox Reserved 1165

From Proteopedia

Revision as of 21:51, 22 March 2016

Human Glucagon Class B G Protein-Coupled Receptors (GPCRs)

Introduction

Structures of Class A vs. Class B GPCRs

How These Structures Lead to Function

Clinical Relevancy

References

Views

Personal tools

Navigation

Search

Toolbox