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Sandbox Reserved 1174

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Extracellularly, LPA is produced from lysophosphatidylcholine by the enzyme autotaxin. All of LPA’s activities are receptor mediated; the signalling lipid interacts with at least six G-protein coupled receptors LPA<sub>1</sub>-LPA<sub>6</sub>.
Extracellularly, LPA is produced from lysophosphatidylcholine by the enzyme autotaxin. All of LPA’s activities are receptor mediated; the signalling lipid interacts with at least six G-protein coupled receptors LPA<sub>1</sub>-LPA<sub>6</sub>.
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== Function ==
== Function ==
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There are many different stabilizing factors in the structure of this receptor. There are three native disulfide bonds in the extracellular region. One of these bonds constrains the N terminal helix to extracellular loop 2. The <scene name='72/721545/N-terminus/1'>N-terminus</scene> functions like a cap on the extracellular side of the protein, packing tightly against ECL1 and ECL2. It also provides <scene name='72/721545/34_39_40/2'>polar amino acids</scene> that interact with the ligand when bound.
There are many different stabilizing factors in the structure of this receptor. There are three native disulfide bonds in the extracellular region. One of these bonds constrains the N terminal helix to extracellular loop 2. The <scene name='72/721545/N-terminus/1'>N-terminus</scene> functions like a cap on the extracellular side of the protein, packing tightly against ECL1 and ECL2. It also provides <scene name='72/721545/34_39_40/2'>polar amino acids</scene> that interact with the ligand when bound.
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<scene name='72/721545/Disulfides/1'>Disulfide bonds</scene>
The <scene name='72/721545/Ligand/1'>binding pocket</scene> for LPA inside the receptor consists of both polar and nonpolar residues. There are polar residues on the N terminus and along one side of the binding pocket. There is also a large hydrophobic pocket for the long acyl chain of LPA.
The <scene name='72/721545/Ligand/1'>binding pocket</scene> for LPA inside the receptor consists of both polar and nonpolar residues. There are polar residues on the N terminus and along one side of the binding pocket. There is also a large hydrophobic pocket for the long acyl chain of LPA.

Revision as of 22:44, 28 March 2016

This Sandbox is Reserved from Jan 11 through August 12, 2016 for use in the course CH462 Central Metabolism taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1160 through Sandbox Reserved 1184.
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Human Lysophosphatidic Acid Receptor 1

Caption for this structure

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
  3. Moolenaar WH, van Meeteren LA, Giepmans BN. The ins and outs of lysophosphatidic acid signaling. Bioessays. 2004 Aug;26(8):870-81. PMID:15273989 doi:http://dx.doi.org/10.1002/bies.20081
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