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*A <scene name='72/721531/Protien_bindbottom/2'>water molecule</scene> inside of the binding pocket helps stabilize the inactive state.
*A <scene name='72/721531/Protien_bindbottom/2'>water molecule</scene> inside of the binding pocket helps stabilize the inactive state.
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Once bound to mavoglurant, transmembrane helix 7 undergoes a conformational change<ref name="Dore" />. The shifting of TM7 will lead to a more global conformational change, which inactivates the receptor<ref name="Dore" />. Variation can be seen in positioning of alpha helices across receptor class. Class C receptors have seemingly less space for mavoglurant to enter as compared to Class A and F receptors<ref name="Wu" />. The position of the ligand binding site is also varied between different classes of mGlu receptors<ref name="Dore" />.
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Upon mavoglurant’s diffusion into the mGlu5 receptor binding pocket, the ordered water cage found in the center of mGlu5 is displaced. Favorable interactions between the hydrophobic regions of the binding pocket and the bicyclic ring and the 3-methylphenyl ring of mavoglurant help increase the strength and energetic favorability of mavoglurant binding via the hydrophobic effect. In the binding pocket mavoglurant can hydrogen bond with Asp 747 and that hydrogen bond will be further stabilized by an extended hydrogen bond network with Gly 652. The hydroxyl group of mavoglurant will also form another hydrogen bond with Ser 805 and Ser 809. Multiple hydrogen bonds make the binding of mavoglurant to the mGlu5 receptor favorable and specific. Once bound to mavoglurant, transmembrane helix 7 undergoes a conformational change<ref name="Dore" />. The shifting of TM7 will lead to a more global conformational change, which inactivates the receptor<ref name="Dore" />. Variation can be seen in positioning of alpha helices across receptor class. Class C receptors have seemingly less space for mavoglurant to enter as compared to Class A and F receptors<ref name="Wu" />. The position of the ligand binding site is also varied between different classes of mGlu receptors<ref name="Dore" />.
=== Ionic Locks ===
=== Ionic Locks ===

Revision as of 23:08, 18 April 2016

Human metabotropic glutamate receptor 5 transmembrane domain

Human metabotropic glutamate receptor 5 transmembrane domain bound to mavoglurant (PDB code of 4oo9). The 7 helices comprise the bulk of the protein structure. mGlu5 receptor is an important part of the glutamate signaling pathway

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