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=== Binding Pocket ===
=== Binding Pocket ===
[[Image: Organic with clipped surface.png|200 px|left|thumb|'''Figure 2.''' Mavoglurant in its binding pocket of the 7TM region of mGLu5 Class C receptor. The binding pocket's surface is clipped in black with the substrate, mavoglurant, in red. The rest of the protein is colored in green. The binding pocket is present in the 7 Helix Transmembrane Domain that would be present in the phospholipid bilayer as an integral protein. The presence of mavoglurant inhibits the function of the metabotropic glutamate receptor.]]
[[Image: Organic with clipped surface.png|200 px|left|thumb|'''Figure 2.''' Mavoglurant in its binding pocket of the 7TM region of mGLu5 Class C receptor. The binding pocket's surface is clipped in black with the substrate, mavoglurant, in red. The rest of the protein is colored in green. The binding pocket is present in the 7 Helix Transmembrane Domain that would be present in the phospholipid bilayer as an integral protein. The presence of mavoglurant inhibits the function of the metabotropic glutamate receptor.]]
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The binding pocket, not to be confused with the glutamate binding site, represents a useful source of regulatory control. The binding pocket is only accessible by a relatively narrow (7 Å) <scene name='72/721531/Bindingsite/1'>entrance</scene><ref name="Dore" />. This small entrance severely restricts the access of both positive and negative allosteric regulators. One such regulator, <scene name='72/721531/Mavo/2'>mavoglurant</scene>, is a relatively small molecule that can travel through the entrance and fit between the helices of the mGlu5 receptor<ref name="Dore" />. Mavoglurant acts as a negative allosteric modulator of the mGlu5 receptor<ref name="Dore" />. Mavoglurant is a relatively hydrophobic molecule, which compliments the largely hydrophobic nature of the interior of mGlu5<ref name="Dore" />. The carbamate tail and hydroxyl group of mavoglurant will also interact with several key amino acids in the binding site of mGlu5<ref name="Dore" />.
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The binding pocket, not to be confused with the glutamate binding site, represents a useful source of regulatory control. The binding pocket is only accessible by a relatively narrow (7 Å) <scene name='72/721531/Bindingsite/2'>entrance</scene><ref name="Dore" />. This small entrance severely restricts the access of both positive and negative allosteric regulators. One such regulator, <scene name='72/721531/Mavo/2'>mavoglurant</scene>, is a relatively small molecule that can travel through the entrance and fit between the helices of the mGlu5 receptor<ref name="Dore" />. Mavoglurant acts as a negative allosteric modulator of the mGlu5 receptor<ref name="Dore" />. Mavoglurant is a relatively hydrophobic molecule, which compliments the largely hydrophobic nature of the interior of mGlu5<ref name="Dore" />. The carbamate tail and hydroxyl group of mavoglurant will also interact with several key amino acids in the binding site of mGlu5<ref name="Dore" />.
Important Amino Acids<ref name="Dore" />:
Important Amino Acids<ref name="Dore" />:
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*<scene name='72/721531/Protien_bindtop/7'>Asparagine</scene> 747 forms a hydrogen bond network with the main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant.
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*<scene name='72/721531/Protien_bindtop/8'>Asparagine</scene> 747 forms a hydrogen bond network with the main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant.
*Bicyclic ring of mavoglurant surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>. <font color='purple'>'''Hydrophobic regions'''</font> of the mGlu5 receptor are shown in <font color='purple'>'''purple'''</font> and the <font color='grey'>'''rest of the helices'''</font> are shown in <font color='grey'>'''grey'''</font>. Mavoglurant is represented by spheres.
*Bicyclic ring of mavoglurant surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>. <font color='purple'>'''Hydrophobic regions'''</font> of the mGlu5 receptor are shown in <font color='purple'>'''purple'''</font> and the <font color='grey'>'''rest of the helices'''</font> are shown in <font color='grey'>'''grey'''</font>. Mavoglurant is represented by spheres.
*2 Catalytic <scene name='72/721531/Protien_bindmiddle/4'>serine</scene> residues H-bond to the hydroxyl oxygen of our ligand.
*2 Catalytic <scene name='72/721531/Protien_bindmiddle/4'>serine</scene> residues H-bond to the hydroxyl oxygen of our ligand.

Current revision

Human metabotropic glutamate receptor 5 transmembrane domain

Human metabotropic glutamate receptor 5 transmembrane domain bound to mavoglurant (PDB code of 4oo9). The 7 helices comprise the bulk of the protein structure. mGlu5 receptor is an important part of the glutamate signaling pathway

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