This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

4bit

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 19:47, 24 January 2018

solution structure of cerebral dopamine neurotrophic factor (CDNF)

Structural highlights

4bit is a 1 chain structure with sequence from Human. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[CDNF_HUMAN] Trophic factor for dopamine neurons. Prevents the 6-hydroxydopamine (6-OHDA)-induced degeneration of dopaminergic neurons. When administered after 6-OHDA-lesioning, restores the dopaminergic function and prevents the degeneration of dopaminergic neurons in substantia nigra (By similarity).

Publication Abstract from PubMed

Cerebral Dopamine Neurotrophic Factor (CDNF) is a promising therapeutic agent for Parkinson's disease. As such, there has been great interest in studying its mode of action, which remains unknown. The 3D crystal structure of the N-terminus (residues 9-107) of CDNF has been determined, but there have been no published structural studies on the full-length protein due to proteolysis of its C-terminal domain, which is considered intrinsically disordered. An improved purification protocol enabled us to obtain active full-length CDNF and to determine its 3D structure in solution. CDNF contains two well-folded domains (residues 10100 and 111157) that are linked by a loop of intermediate flexibility. We identified two surface patches on the N-terminal domain that were characterized by increased conformational dynamics that should allow them to embrace active sites. One of these patches is formed by residues S33, L34, A66, K68, I69, L70, S71 and E72. The other includes a flexibly disordered N-terminal tail (residues 19), followed by the N-terminal portion of alpha-helix 1 (residues C11, E12, V13, K15 and E16) and residue E88. The surface of the C-terminal domain contains two conserved active sites, which have previously been identified in Mesencephalic Astrocyte-derived Neurotrophic Factor, a CDNF paralog, which corresponds to its intracellular mode of action. We also showed that CDNF was able to protect dopaminergic neurons against injury caused by alpha-synuclein oligomers. This advises its use against physiological damages caused by alpha-synuclein oligomers, as observed in Parkinson's disease and several other neurodegenerative diseases.

The Solution Structure and Dynamics of Full-length Human Cerebral Dopamine Neurotrophic Factor and Its Neuroprotective Role Against alpha-Synuclein Oligomers.,Latge C, Cabral KM, de Oliveira GA, Raymundo DP, Freitas JA, Johanson L, Romao LF, Palhano FL, Herrmann T, Almeida MS, Foguel D J Biol Chem. 2015 Jul 6. pii: jbc.M115.662254. PMID:26149686^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Latge C, Cabral KM, de Oliveira GA, Raymundo DP, Freitas JA, Johanson L, Romao LF, Palhano FL, Herrmann T, Almeida MS, Foguel D. The Solution Structure and Dynamics of Full-length Human Cerebral Dopamine Neurotrophic Factor and Its Neuroprotective Role Against alpha-Synuclein Oligomers. J Biol Chem. 2015 Jul 6. pii: jbc.M115.662254. PMID:26149686 doi:http://dx.doi.org/10.1074/jbc.M115.662254

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4bit"

@@ Line 4: / Line 4: @@
 == Structural highlights ==
 <table><tr><td colspan='2'>[[4bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BIT FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bit OCA], [http://pdbe.org/4bit PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bit RCSB], [http://www.ebi.ac.uk/pdbsum/4bit PDBsum]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bit OCA], [http://pdbe.org/4bit PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bit RCSB], [http://www.ebi.ac.uk/pdbsum/4bit PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4bit ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 22: / Line 22: @@
 </StructureSection>
 [[Category: Human]]
-[[Category: Almeida, m s]]
+[[Category: Almeida, M S]]
-[[Category: Cabral, k m.s]]
+[[Category: Cabral, K M.S]]
-[[Category: Foguel, d]]
+[[Category: Foguel, D]]
-[[Category: Herrmann, t]]
+[[Category: Herrmann, T]]
-[[Category: Latge, c]]
+[[Category: Latge, C]]
-[[Category: Raymundo, d p]]
+[[Category: Raymundo, D P]]
 [[Category: Parkinson]]
 [[Category: Signaling protein]]

4bit

From Proteopedia

Revision as of 19:47, 24 January 2018

solution structure of cerebral dopamine neurotrophic factor (CDNF)

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox