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| | ==Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D== | | ==Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D== |
| - | <StructureSection load='4e52' size='340' side='right' caption='[[4e52]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='4e52' size='340' side='right'caption='[[4e52]], [[Resolution|resolution]] 1.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4e52]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E52 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4E52 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4e52]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E52 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GMH:L-GLYCERO-D-MANNO-HEPTOPYRANOSE'>GMH</scene>, <scene name='pdbligand=KD5:4,7-ANHYDRO-3-DEOXY-D-MANNO-OCT-2-ULOSONIC+ACID'>KD5</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GMH:L-GLYCERO-D-MANNO-HEPTOPYRANOSE'>GMH</scene>, <scene name='pdbligand=KD5:4,7-ANHYDRO-3-DEOXY-D-MANNO-OCT-2-ULOSONIC+ACID'>KD5</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pw9|1pw9]], [[1pwb|1pwb]], [[3ikn|3ikn]], [[3ikp|3ikp]], [[3ikq|3ikq]], [[3ikr|3ikr]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e52 OCA], [https://pdbe.org/4e52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e52 RCSB], [https://www.ebi.ac.uk/pdbsum/4e52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e52 ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SFTPD, COLEC7, PSPD, SFTP4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4e52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e52 OCA], [http://pdbe.org/4e52 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4e52 RCSB], [http://www.ebi.ac.uk/pdbsum/4e52 PDBsum]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/SFTPD_HUMAN SFTPD_HUMAN]] Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moieties. | + | [[https://www.uniprot.org/uniprot/SFTPD_HUMAN SFTPD_HUMAN]] Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moieties. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| - | [[Category: Greenhough, T J]] | + | [[Category: Large Structures]] |
| - | [[Category: Shrive, A K]] | + | [[Category: Greenhough TJ]] |
| - | [[Category: Alpha-helical coiled coil]] | + | [[Category: Shrive AK]] |
| - | [[Category: Carbohydrate recognition domain]]
| + | |
| - | [[Category: Lectin]]
| + | |
| - | [[Category: Neck+crd]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| - | [[Category: Trimeric recombinant collectin fragment]]
| + | |
| Structural highlights
Function
[SFTPD_HUMAN] Contributes to the lung's defense against inhaled microorganisms. May participate in the extracellular reorganization or turnover of pulmonary surfactant. Binds strongly maltose residues and to a lesser extent other alpha-glucosyl moieties.
Publication Abstract from PubMed
The carbohydrate recognition domains (CRDs) of lung collectin surfactant protein D (SP-D) recognize sugar patterns on the surface of lung pathogens and promote phagocytosis. Using Haemophilus influenzae Eagan strains expressing well-characterized lipopolysaccharide (LPS) surface structures of various levels of complexity, we show that bacterial recognition and binding by SP-D is inversely related to LPS chain extent and complexity. The crystal structure of a biologically active recombinant trimeric SP-D CRD complexed with a delipidated Eagan 4A LPS suggests that efficient LPS recognition by SP-D requires multiple binding interactions utilizing the three major ligand-binding determinants in the SP-D binding pocket, with Ca-dependent binding of inner-core heptose accompanied by interaction of anhydro-Kdo (4,7-anhydro-3-deoxy-d-manno-oct-2-ulosonic acid) with Arg343 and Asp325. Combined with enzyme-linked immunosorbent assays (ELISAs) and fluorescence-activated cell sorter (FACS) binding analyses, our results show that extended LPS structures previously thought to be targets for collectins are important in shielding the more vulnerable sites in the LPS core, revealing a mechanism by which pathogens with complex LPS extensions efficiently evade a first-line mucosal innate immune defense. The structure also reveals for the first time the dominant form of anhydro-Kdo.
Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains.,Clark HW, Mackay RM, Deadman ME, Hood DW, Madsen J, Moxon ER, Townsend JP, Reid KB, Ahmed A, Shaw AJ, Greenhough TJ, Shrive AK Infect Immun. 2016 Apr 22;84(5):1585-92. doi: 10.1128/IAI.01239-15. Print 2016, May. PMID:26953329[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Clark HW, Mackay RM, Deadman ME, Hood DW, Madsen J, Moxon ER, Townsend JP, Reid KB, Ahmed A, Shaw AJ, Greenhough TJ, Shrive AK. Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains. Infect Immun. 2016 Apr 22;84(5):1585-92. doi: 10.1128/IAI.01239-15. Print 2016, May. PMID:26953329 doi:http://dx.doi.org/10.1128/IAI.01239-15
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