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5iud

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Revision as of 03:43, 6 September 2017

Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer

Structural highlights

5iud is a 12 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Activity:	DNA-directed DNA polymerase, with EC number 2.7.7.7
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[DPOLA_HUMAN] Plays an essential role in the initiation of DNA replication. During the S phase of the cell cycle, the DNA polymerase alpha complex (composed of a catalytic subunit POLA1/p180, a regulatory subunit POLA2/p70 and two primase subunits PRIM1/p49 and PRIM2/p58) is recruited to DNA at the replicative forks via direct interactions with MCM10 and WDHD1. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. These primers are initially extended by the polymerase alpha catalytic subunit and subsequently transferred to polymerase delta and polymerase epsilon for processive synthesis on the lagging and leading strand, respectively. The reason this transfer occurs is because the polymerase alpha has limited processivity and lacks intrinsic 3' exonuclease activity for proofreading error, and therefore is not well suited for replicating long complexes.^[1]

Publication Abstract from PubMed

The Polalpha/primase complex assembles the short RNA-DNA fragments for priming of lagging and leading strand DNA replication in eukaryotes. As such, the Polalpha polymerase subunit encounters two types of substrates during primer synthesis: an RNA:DNA helix and a DNA:DNA helix. The engagement of the polymerase subunit with the DNA:DNA helix has been suggested as the of basis for primer termination in eukaryotes. However, there is no structural information on how the Polalpha polymerase subunit actually engages with a DNA:DNA helix during primer synthesis. We present here the first crystal structure of human Polalpha polymerase subunit in complex with a DNA:DNA helix. Unexpectedly, we find that portion of the DNA:DNA helix in contact with the polymerase is not in a B-form but in a hybrid A-B form. Almost all of the contacts observed previously with an RNA primer are preserved with a DNA primer - with the same set of polymerase residues tracking the sugar-phosphate backbone of the DNA or RNA primer. Thus, rather than loss of specific contacts, the free energy cost of distorting DNA from B- to hybrid A-B form may augur the termination of primer synthesis in eukaryotes.

Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer.,Coloma J, Johnson RE, Prakash L, Prakash S, Aggarwal AK Sci Rep. 2016 Apr 1;6:23784. doi: 10.1038/srep23784. PMID:27032819^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Dantzer F, Nasheuer HP, Vonesch JL, de Murcia G, Menissier-de Murcia J. Functional association of poly(ADP-ribose) polymerase with DNA polymerase alpha-primase complex: a link between DNA strand break detection and DNA replication. Nucleic Acids Res. 1998 Apr 15;26(8):1891-8. PMID:9518481
↑ Coloma J, Johnson RE, Prakash L, Prakash S, Aggarwal AK. Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer. Sci Rep. 2016 Apr 1;6:23784. doi: 10.1038/srep23784. PMID:27032819 doi:http://dx.doi.org/10.1038/srep23784

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5iud"

Categories: DNA-directed DNA polymerase | Aggarwal, A K | Coloma, J | Dna polymerase binary complex | Transferase-dna complex

@@ Line 5: / Line 5: @@
 <table><tr><td colspan='2'>[[5iud]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IUD FirstGlance]. <br>
 </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iud OCA], [http://pdbe.org/5iud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iud RCSB], [http://www.ebi.ac.uk/pdbsum/5iud PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iud OCA], [http://pdbe.org/5iud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iud RCSB], [http://www.ebi.ac.uk/pdbsum/5iud PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5iud ProSAT]</span></td></tr>
 </table>
 == Function ==

5iud

From Proteopedia

Revision as of 03:43, 6 September 2017

Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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