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5d8n
From Proteopedia
(Difference between revisions)
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<StructureSection load='5d8n' size='340' side='right' caption='[[5d8n]], [[Resolution|resolution]] 2.15Å' scene=''> | <StructureSection load='5d8n' size='340' side='right' caption='[[5d8n]], [[Resolution|resolution]] 2.15Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5d8n]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D8N FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5d8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Lycopersicon_esculentum Lycopersicon esculentum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D8N FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d8n OCA], [http://pdbe.org/5d8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d8n RCSB], [http://www.ebi.ac.uk/pdbsum/5d8n PDBsum]</span></td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LAPA1, LAP, LAP2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4081 Lycopersicon esculentum])</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d8n OCA], [http://pdbe.org/5d8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d8n RCSB], [http://www.ebi.ac.uk/pdbsum/5d8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d8n ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[[http://www.uniprot.org/uniprot/AMPL1_SOLLC AMPL1_SOLLC]] Presumably involved in the processing and regular turnover of intracellular proteins. | [[http://www.uniprot.org/uniprot/AMPL1_SOLLC AMPL1_SOLLC]] Presumably involved in the processing and regular turnover of intracellular proteins. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Tomato plants express acidic leucine aminopeptidase (LAP-A) in response to various environmental stressors. LAP-A not only functions as a peptidase for diverse peptide substrates, but also displays chaperone activity. A K354E mutation has been shown to abolish the peptidase activity but to enhance the chaperone activity of LAP-A. To better understand this moonlighting function of LAP-A, the crystal structure of the K354E mutant was determined at 2.15 A resolution. The structure reveals that the K354E mutation destabilizes an active-site loop and causes significant rearrangement of active-site residues, leading to loss of the catalytic metal-ion coordination required for the peptidase activity. Although the mutant was crystallized in the same hexameric form as wild-type LAP-A, gel-filtration chromatography revealed an apparent shift from the hexamer to lower-order oligomers for the K354E mutant, showing a mixture of monomers to trimers in solution. In addition, surface-probing assays indicated that the K354E mutant has more accessible hydrophobic areas than wild-type LAP-A. Consistently, computational thermodynamic estimations of the interfaces between LAP-A monomers suggest that increased exposure of hydrophobic surfaces occurs upon hexamer breakdown. These results suggest that the K354E mutation disrupts the active-site loop, which also contributes to the hexameric assembly, and destabilizes the hexamers, resulting in much greater hydrophobic areas accessible for efficient chaperone activity than in the wild-type LAP-A. | ||
| + | |||
| + | Structural insights into chaperone-activity enhancement by a K354E mutation in tomato acidic leucine aminopeptidase.,DuPrez KT, Scranton MA, Walling LL, Fan L Acta Crystallogr D Struct Biol. 2016 May;72(Pt 5):694-702. doi:, 10.1107/S205979831600509X. Epub 2016 Apr 26. PMID:27139632<ref>PMID:27139632</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5d8n" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Lycopersicon esculentum]] | ||
[[Category: DuPrez, K T]] | [[Category: DuPrez, K T]] | ||
[[Category: Fan, L]] | [[Category: Fan, L]] | ||
Revision as of 06:18, 1 November 2017
Tomato leucine aminopeptidase mutant - K354E
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