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1k98

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[[Image:1k98.jpg|left|200px]]
[[Image:1k98.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 1k98 |SIZE=350|CAPTION= <scene name='initialview01'>1k98</scene>, resolution 3.75&Aring;
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The line below this paragraph, containing "STRUCTURE_1k98", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_synthase Methionine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.13 2.1.1.13] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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|DOMAIN=
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{{STRUCTURE_1k98| PDB=1k98 | SCENE= }}
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|RELATEDENTRY=[[1msk|1msk]], [[1bmd|1bmd]], [[1k7y|1k7y]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k98 OCA], [http://www.ebi.ac.uk/pdbsum/1k98 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1k98 RCSB]</span>
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'''AdoMet complex of MetH C-terminal fragment'''
'''AdoMet complex of MetH C-terminal fragment'''
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[[Category: Matthews, R G.]]
[[Category: Matthews, R G.]]
[[Category: Pattridge, K A.]]
[[Category: Pattridge, K A.]]
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[[Category: adomet binding]]
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[[Category: Adomet binding]]
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[[Category: domain interaction]]
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[[Category: Domain interaction]]
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[[Category: motion of 4-helix bundle]]
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[[Category: Motion of 4-helix bundle]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 22:27:47 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:45:13 2008''
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Revision as of 19:27, 2 May 2008

Template:STRUCTURE 1k98

AdoMet complex of MetH C-terminal fragment


Overview

B(12)-dependent methionine synthase (MetH) from Escherichia coli is a large modular protein that uses bound cobalamin as an intermediate methyl carrier. Major domain rearrangements have been postulated to explain how cobalamin reacts with three different substrates: homocysteine, methyltetrahydrofolate and S-adenosylmethionine (AdoMet). Here we describe the 3.0 A structure of a 65 kDa C-terminal fragment of MetH that spans the cobalamin- and AdoMet-binding domains, arranged in a conformation suitable for the methyl transfer from AdoMet to cobalamin that occurs during activation. In the conversion to the activation conformation, a helical domain that capped the cofactor moves 26 A and rotates by 63 degrees, allowing formation of a new interface between cobalamin and the AdoMet-binding (activation) domain. Interactions with the MetH activation domain drive the cobalamin away from its binding domain in a way that requires dissociation of the axial cobalt ligand and, thereby, provide a mechanism for control of the distribution of enzyme conformations.

About this Structure

1K98 is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Domain alternation switches B(12)-dependent methionine synthase to the activation conformation., Bandarian V, Pattridge KA, Lennon BW, Huddler DP, Matthews RG, Ludwig ML, Nat Struct Biol. 2002 Jan;9(1):53-6. PMID:11731805 Page seeded by OCA on Fri May 2 22:27:47 2008

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