4dsk

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==Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium==
==Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium==
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<StructureSection load='4dsk' size='340' side='right' caption='[[4dsk]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
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<StructureSection load='4dsk' size='340' side='right'caption='[[4dsk]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4dsk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DSK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DSK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4dsk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DSK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DSK FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ht3|3ht3]], [[4dsi|4dsi]], [[4dsj|4dsj]], [[4dsl|4dsl]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dsk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dsk OCA], [https://pdbe.org/4dsk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dsk RCSB], [https://www.ebi.ac.uk/pdbsum/4dsk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dsk ProSAT]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DPO1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dsk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dsk OCA], [http://pdbe.org/4dsk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dsk RCSB], [http://www.ebi.ac.uk/pdbsum/4dsk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dsk ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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==See Also==
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[[https://www.uniprot.org/uniprot/E1C9K5_GEOSE E1C9K5_GEOSE]]
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*[[DNA polymerase|DNA polymerase]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Atcc 12980]]
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[[Category: Geobacillus stearothermophilus]]
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[[Category: DNA-directed DNA polymerase]]
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[[Category: Large Structures]]
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[[Category: Abdur, R]]
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[[Category: Abdur R]]
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[[Category: Caton-Willians, J]]
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[[Category: Caton-Willians J]]
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[[Category: Gan, J H]]
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[[Category: Gan JH]]
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[[Category: Huang, Z]]
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[[Category: Huang Z]]
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[[Category: Liu, H H]]
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[[Category: Liu HH]]
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[[Category: Sheng, J]]
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[[Category: Sheng J]]
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[[Category: Soares, A S]]
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[[Category: Soares AS]]
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[[Category: Base stacking]]
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[[Category: Blunt end extension]]
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[[Category: Dna polymerase]]
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[[Category: Dna synthesis]]
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[[Category: Polymerization fidelity]]
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[[Category: Purine selectivity]]
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[[Category: Pyrophosphorolysis]]
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[[Category: Transferase-dna complex]]
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Revision as of 08:36, 21 September 2022

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium

PDB ID 4dsk

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