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| | ==Tacaribe nucleoprotein structure== | | ==Tacaribe nucleoprotein structure== |
| - | <StructureSection load='4gve' size='340' side='right' caption='[[4gve]], [[Resolution|resolution]] 1.73Å' scene=''> | + | <StructureSection load='4gve' size='340' side='right'caption='[[4gve]], [[Resolution|resolution]] 1.73Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4gve]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tacvf Tacvf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GVE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GVE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4gve]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tacaribe_virus_strain_Franze-Fernandez Tacaribe virus strain Franze-Fernandez]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GVE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GVE FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3mwp|3mwp]], [[4g9z|4g9z]], [[4gv3|4gv3]], [[4gv6|4gv6]], [[4gv9|4gv9]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gve FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gve OCA], [https://pdbe.org/4gve PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gve RCSB], [https://www.ebi.ac.uk/pdbsum/4gve PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gve ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">N, nucleoprotein ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928313 TACVF])</td></tr>
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gve FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gve OCA], [http://pdbe.org/4gve PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4gve RCSB], [http://www.ebi.ac.uk/pdbsum/4gve PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4gve ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/NCAP_TACVF NCAP_TACVF]] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC). Serves as template for viral transcription and replication. The increased presence of protein N in host cell does not seem to trigger the switch from transcription to replication as observed in other negative strain RNA viruses (By similarity). | + | [https://www.uniprot.org/uniprot/NCAP_TACVF NCAP_TACVF] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC). Serves as template for viral transcription and replication. The increased presence of protein N in host cell does not seem to trigger the switch from transcription to replication as observed in other negative strain RNA viruses (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[Nucleoprotein|Nucleoprotein]] | + | *[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Tacvf]] | + | [[Category: Large Structures]] |
| - | [[Category: Dong, C]] | + | [[Category: Tacaribe virus strain Franze-Fernandez]] |
| - | [[Category: Dong, H]] | + | [[Category: Dong C]] |
| - | [[Category: Huang, Q]] | + | [[Category: Dong H]] |
| - | [[Category: Jiang, X]] | + | [[Category: Huang Q]] |
| - | [[Category: Liang, Y]] | + | [[Category: Jiang X]] |
| - | [[Category: Ly, H]] | + | [[Category: Liang Y]] |
| - | [[Category: Wang, W]] | + | [[Category: Ly H]] |
| - | [[Category: Deddh family enzyme]]
| + | [[Category: Wang W]] |
| - | [[Category: Viral protein]]
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| Structural highlights
Function
NCAP_TACVF Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC). Serves as template for viral transcription and replication. The increased presence of protein N in host cell does not seem to trigger the switch from transcription to replication as observed in other negative strain RNA viruses (By similarity).
Publication Abstract from PubMed
A hallmark of severe Lassa fever is the generalized immune suppression, the mechanism of which is poorly understood. Lassa virus (LASV) nucleoprotein (NP) is the only known 3-5 exoribonuclease that can suppress type I interferon (IFN) production possibly by degrading immune-stimulatory RNAs. How this unique enzymatic activity of LASV NP recognizes and processes RNA substrates is unknown. We provide an atomic view of a catalytically active exoribonuclease domain of LASV NP (LASV NP-C) in the process of degrading a 5 triphosphate double-stranded (ds) RNA substrate - a typical pathogen-associated molecular pattern (PAMP) molecule - to induce type I IFN production. Additionally, we provide for the first time a high-resolution crystal structure of an active exoribonuclease domain of Tacaribe arenavirus (TCRV) NP. Coupled with the in vitro enzymatic and cell-based interferon suppression assays, these structural analyses strongly support a unified model of an exoribonuclease-dependent IFN suppression mechanism shared by all known arenaviruses. New knowledge learned from these studies should aid the development of therapeutics against pathogenic arenaviruses that can infect hundreds of thousand individuals and kill thousands annually.
Structures of arenaviral nucleoproteins with triphosphate dsRNA reveal a unique mechanism of immune suppression.,Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C J Biol Chem. 2013 Apr 24. PMID:23615902[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Jiang X, Huang Q, Wang W, Dong H, Ly H, Liang Y, Dong C. Structures of arenaviral nucleoproteins with triphosphate dsRNA reveal a unique mechanism of immune suppression. J Biol Chem. 2013 Apr 24. PMID:23615902 doi:10.1074/jbc.M112.420521
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