This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4gxh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004==
==Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004==
-
<StructureSection load='4gxh' size='340' side='right' caption='[[4gxh]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+
<StructureSection load='4gxh' size='340' side='right'caption='[[4gxh]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4gxh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Xenbs Xenbs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GXH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4gxh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenorhabdus_bovienii_SS-2004 Xenorhabdus bovienii SS-2004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GXH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GXH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gxh OCA], [https://pdbe.org/4gxh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gxh RCSB], [https://www.ebi.ac.uk/pdbsum/4gxh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gxh ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pcp, XBJ1_1667 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=406818 XENBS])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gxh OCA], [http://pdbe.org/4gxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4gxh RCSB], [http://www.ebi.ac.uk/pdbsum/4gxh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4gxh ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/D3V0W1_XENBS D3V0W1_XENBS]] Removes 5-oxoproline from various penultimate amino acid residues except L-proline (By similarity).[HAMAP-Rule:MF_00417][SAAS:SAAS000816_004_005679]
+
[https://www.uniprot.org/uniprot/D3V0W1_XENBS D3V0W1_XENBS] Removes 5-oxoproline from various penultimate amino acid residues except L-proline (By similarity).[HAMAP-Rule:MF_00417][SAAS:SAAS000816_004_005679]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyroglutamyl-peptidase I]]
+
[[Category: Large Structures]]
-
[[Category: Xenbs]]
+
[[Category: Xenorhabdus bovienii SS-2004]]
-
[[Category: Almo, S C]]
+
[[Category: Almo SC]]
-
[[Category: Ghosh, A]]
+
[[Category: Ghosh A]]
-
[[Category: Structural genomic]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: Psi-biology]]
+

Revision as of 07:24, 26 October 2022

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004

PDB ID 4gxh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools