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| ==Structure of E. coli beta-Glucuronidase bound with a novel, potent inhibitor 2-[4-(1,3-benzodioxol-5-ylmethyl)piperazin-1-yl]-N-[(1S,2S,5S)-2,5-dimethoxycyclohexyl]acetamide== | | ==Structure of E. coli beta-Glucuronidase bound with a novel, potent inhibitor 2-[4-(1,3-benzodioxol-5-ylmethyl)piperazin-1-yl]-N-[(1S,2S,5S)-2,5-dimethoxycyclohexyl]acetamide== |
- | <StructureSection load='4jhz' size='340' side='right' caption='[[4jhz]], [[Resolution|resolution]] 2.83Å' scene=''> | + | <StructureSection load='4jhz' size='340' side='right'caption='[[4jhz]], [[Resolution|resolution]] 2.83Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4jhz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JHZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4jhz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JHZ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1KV:2-[4-(1,3-BENZODIOXOL-5-YLMETHYL)PIPERAZIN-1-YL]-N-[(1S,2S,5S)-2,5-DIMETHOXYCYCLOHEXYL]ACETAMIDE'>1KV</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1KV:2-[4-(1,3-BENZODIOXOL-5-YLMETHYL)PIPERAZIN-1-YL]-N-[(1S,2S,5S)-2,5-DIMETHOXYCYCLOHEXYL]ACETAMIDE'>1KV</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jhz OCA], [https://pdbe.org/4jhz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jhz RCSB], [https://www.ebi.ac.uk/pdbsum/4jhz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jhz ProSAT]</span></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lpf|3lpf]], [[3k46|3k46]], [[3k4a|3k4a]], [[3k4d|3k4d]], [[3lpg|3lpg]]</td></tr>
| + | |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b1617, gurA, gusA, JW1609, uidA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucuronidase Beta-glucuronidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.31 3.2.1.31] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jhz OCA], [http://pdbe.org/4jhz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jhz RCSB], [http://www.ebi.ac.uk/pdbsum/4jhz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jhz ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/BGLR_ECOLI BGLR_ECOLI] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Glucuronidase|Glucuronidase]] | + | *[[Glucuronisidase 3D structures|Glucuronisidase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Beta-glucuronidase]] | + | [[Category: Escherichia coli K-12]] |
- | [[Category: Ecoli]] | + | [[Category: Large Structures]] |
- | [[Category: Redinbo, M R]] | + | [[Category: Redinbo MR]] |
- | [[Category: Roberts, A B]] | + | [[Category: Roberts AB]] |
- | [[Category: Wallace, B D]] | + | [[Category: Wallace BD]] |
- | [[Category: Alpha/beta barrel]]
| + | |
- | [[Category: Beta-sandwich domain]]
| + | |
- | [[Category: Hydrolase-hydrolase inhibitor complex]]
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- | [[Category: Sugar-binding domain]]
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| Structural highlights
Function
BGLR_ECOLI
Publication Abstract from PubMed
Bacterial beta-glucuronidases expressed by the symbiotic intestinal microbiota appear to play important roles in drug-induced epithelial cell toxicity in the gastrointestinal (GI) tract. For the anticancer drug CPT-11 (irinotecan) and the nonsteroidal anti-inflammatory drug diclofenac, it has been shown that removal of the glucuronide moieties from drug metabolites by bacterial beta-glucuronidases in the GI lumen can significantly damage the intestinal epithelium. Furthermore, selective disruption of bacterial beta-glucuronidases by small molecule inhibitors alleviates these side effects, which, for CPT-11 {7-ethyl-10-[4-(1-piperidino)-1-piperidino]}, can be dose limiting. Here we characterize novel microbial beta-glucuronidase inhibitors that inhibit Escherichia coli beta-glucuronidase in vitro with Ki values between 180 nM and 2 muM, and disrupt the enzyme in E. coli cells, with EC50 values as low as 300 nM. All compounds are selective for E. coli beta-glucuronidase without inhibiting purified mammalian beta-glucuronidase, and they do not impact the survival of either bacterial or mammalian cells. The 2.8 A resolution crystal structure of one inhibitor bound to E. coli beta-glucuronidase demonstrates that it contacts and orders only a portion of the "bacterial loop" present in microbial, but not mammalian, beta-glucuronidases. The most potent compound examined in this group was found to protect mice against CPT-11-induced diarrhea. Taken together, these data advance our understanding of the chemical and structural basis of selective microbial beta-glucuronidase inhibition, which may improve human drug efficacy and toxicity.
Molecular Insights into Microbial beta-Glucuronidase Inhibition to Abrogate CPT-11 Toxicity.,Roberts AB, Wallace BD, Venkatesh MK, Mani S, Redinbo MR Mol Pharmacol. 2013 Aug;84(2):208-17. doi: 10.1124/mol.113.085852. Epub 2013 May , 20. PMID:23690068[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Roberts AB, Wallace BD, Venkatesh MK, Mani S, Redinbo MR. Molecular Insights into Microbial beta-Glucuronidase Inhibition to Abrogate CPT-11 Toxicity. Mol Pharmacol. 2013 Aug;84(2):208-17. doi: 10.1124/mol.113.085852. Epub 2013 May , 20. PMID:23690068 doi:10.1124/mol.113.085852
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