This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1lrh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1lrh.gif|left|200px]]
[[Image:1lrh.gif|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1lrh |SIZE=350|CAPTION= <scene name='initialview01'>1lrh</scene>, resolution 1.9&Aring;
+
The line below this paragraph, containing "STRUCTURE_1lrh", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NLA:NAPHTHALEN-1-YL-ACETIC+ACID'>NLA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE= ABP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 Zea mays])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1lrh| PDB=1lrh | SCENE= }}
-
|RELATEDENTRY=[[1lr5|1LR5]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lrh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lrh OCA], [http://www.ebi.ac.uk/pdbsum/1lrh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1lrh RCSB]</span>
+
-
}}
+
'''Crystal structure of auxin-binding protein 1 in complex with 1-naphthalene acetic acid'''
'''Crystal structure of auxin-binding protein 1 in complex with 1-naphthalene acetic acid'''
Line 32: Line 29:
[[Category: Venis, M.]]
[[Category: Venis, M.]]
[[Category: Woo, E J.]]
[[Category: Woo, E J.]]
-
[[Category: beta jellyroll]]
+
[[Category: Beta jellyroll]]
-
[[Category: double stranded parallel beta helix]]
+
[[Category: Double stranded parallel beta helix]]
-
[[Category: germin like protein]]
+
[[Category: Germin like protein]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 00:12:42 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:06:23 2008''
+

Revision as of 21:12, 2 May 2008

Image:1lrh.gif

Template:STRUCTURE 1lrh

Crystal structure of auxin-binding protein 1 in complex with 1-naphthalene acetic acid


Overview

The structure of auxin-binding protein 1 (ABP1) from maize has been determined at 1.9 A resolution, revealing its auxin-binding site. The structure confirms that ABP1 belongs to the ancient and functionally diverse germin/seed storage 7S protein superfamily. The binding pocket of ABP1 is predominantly hydrophobic with a metal ion deep inside the pocket coordinated by three histidines and a glutamate. Auxin binds within this pocket, with its carboxylate binding the zinc and its aromatic ring binding hydrophobic residues including Trp151. There is a single disulfide between Cys2 and Cys155. No conformational rearrangement of ABP1 was observed when auxin bound to the protein in the crystal, but examination of the structure reveals a possible mechanism of signal transduction.

About this Structure

1LRH is a Single protein structure of sequence from Zea mays. Full crystallographic information is available from OCA.

Reference

Crystal structure of auxin-binding protein 1 in complex with auxin., Woo EJ, Marshall J, Bauly J, Chen JG, Venis M, Napier RM, Pickersgill RW, EMBO J. 2002 Jun 17;21(12):2877-85. PMID:12065401 Page seeded by OCA on Sat May 3 00:12:42 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1lrh"
Personal tools