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| | ==Crystal structure of the RecOR complex in an open conformation== | | ==Crystal structure of the RecOR complex in an open conformation== |
| - | <StructureSection load='4jcv' size='340' side='right' caption='[[4jcv]], [[Resolution|resolution]] 3.34Å' scene=''> | + | <StructureSection load='4jcv' size='340' side='right'caption='[[4jcv]], [[Resolution|resolution]] 3.34Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4jcv]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Deira Deira]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JCV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4jcv]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JCV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">recR, DR_0198 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243230 DEIRA]), recO, DR_0819 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243230 DEIRA])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jcv OCA], [https://pdbe.org/4jcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jcv RCSB], [https://www.ebi.ac.uk/pdbsum/4jcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jcv ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jcv OCA], [http://pdbe.org/4jcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jcv RCSB], [http://www.ebi.ac.uk/pdbsum/4jcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jcv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RECR_DEIRA RECR_DEIRA]] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (By similarity). [[http://www.uniprot.org/uniprot/Q9RW50_DEIRA Q9RW50_DEIRA]] Involved in DNA repair and RecF pathway recombination (By similarity).[HAMAP-Rule:MF_00201][SAAS:SAAS022572_004_002906] | + | [https://www.uniprot.org/uniprot/RECR_DEIRA RECR_DEIRA] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Deira]] | + | [[Category: Deinococcus radiodurans R1]] |
| - | [[Category: McSweeney, S]] | + | [[Category: Large Structures]] |
| - | [[Category: Radzimanowski, J]] | + | [[Category: McSweeney S]] |
| - | [[Category: Timmins, J]] | + | [[Category: Radzimanowski J]] |
| - | [[Category: Dna binding]] | + | [[Category: Timmins J]] |
| - | [[Category: Dna damage]]
| + | |
| - | [[Category: Dna repair]]
| + | |
| - | [[Category: Homologous recombination]]
| + | |
| - | [[Category: Recfor pathway]]
| + | |
| - | [[Category: Reco]]
| + | |
| - | [[Category: Recombination]]
| + | |
| - | [[Category: Recor]]
| + | |
| - | [[Category: Recr]]
| + | |
| - | [[Category: Zinc-finger]]
| + | |
| Structural highlights
Function
RECR_DEIRA May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (By similarity).
Publication Abstract from PubMed
Efficient DNA repair is critical for cell survival and the maintenance of genome integrity. The homologous recombination pathway is responsible for the repair of DNA double-strand breaks within cells. Initiation of this pathway in bacteria can be carried out by either the RecBCD or the RecFOR proteins. An important regulatory player within the RecFOR pathway is the RecOR complex that facilitates RecA loading onto DNA. Here we report new data regarding the assembly of Deinococcus radiodurans RecOR and its interaction with DNA, providing novel mechanistic insight into the mode of action of RecOR in homologous recombination. We present a higher resolution crystal structure of RecOR in an 'open' conformation in which the tetrameric RecR ring flanked by two RecO molecules is accessible for DNA binding. We show using small-angle neutron scattering and mutagenesis studies that DNA binding does indeed occur within the RecR ring. Binding of single-stranded DNA occurs without any major conformational changes of the RecOR complex while structural rearrangements are observed on double-stranded DNA binding. Finally, our molecular dynamics simulations, supported by our biochemical data, provide a detailed picture of the DNA binding motif of RecOR and reveal that single-stranded DNA is sandwiched between the two facing oligonucleotide binding domains of RecO within the RecR ring.
An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex.,Radzimanowski J, Dehez F, Round A, Bidon-Chanal A, McSweeney S, Timmins J Nucleic Acids Res. 2013 Jun 27. PMID:23814185[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Radzimanowski J, Dehez F, Round A, Bidon-Chanal A, McSweeney S, Timmins J. An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex. Nucleic Acids Res. 2013 Jun 27. PMID:23814185 doi:10.1093/nar/gkt572
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