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4i81

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Revision as of 08:47, 9 November 2022

Crystal Structure of ATPgS bound ClpX Hexamer

Structural highlights

4i81 is a 6 chain structure with sequence from Escherichia coli K-12. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CLPX_ECOLI ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. It may bind to the lambda O substrate protein and present it to the ClpP protease in a form that can be recognized and readily hydrolyzed by ClpP. Can perform chaperone functions in the absence of ClpP.[HAMAP-Rule:MF_00175]

Publication Abstract from PubMed

ClpX, a AAA+ ring homohexamer, uses the energy of ATP binding and hydrolysis to power conformational changes that unfold and translocate target proteins into the ClpP peptidase for degradation. In multiple crystal structures, some ClpX subunits adopt nucleotide-loadable conformations, others adopt unloadable conformations, and each conformational class exhibits substantial variability. Using mutagenesis of individual subunits in covalently tethered hexamers together with fluorescence methods to assay the conformations and nucleotide-binding properties of these subunits, we demonstrate that dynamic interconversion between loadable and unloadable conformations is required to couple ATP hydrolysis by ClpX to mechanical work. ATP binding to different classes of subunits initially drives staged allosteric changes, which set the conformation of the ring to allow hydrolysis and linked mechanical steps. Subunit switching between loadable and unloadable conformations subsequently isomerizes or resets the configuration of the nucleotide-loaded ring and is required for mechanical function.

Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine.,Stinson BM, Nager AR, Glynn SE, Schmitz KR, Baker TA, Sauer RT Cell. 2013 Apr 25;153(3):628-39. doi: 10.1016/j.cell.2013.03.029. PMID:23622246^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Stinson BM, Nager AR, Glynn SE, Schmitz KR, Baker TA, Sauer RT. Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine. Cell. 2013 Apr 25;153(3):628-39. doi: 10.1016/j.cell.2013.03.029. PMID:23622246 doi:10.1016/j.cell.2013.03.029

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4i81"

@@ Line 1: / Line 1: @@
 ==Crystal Structure of ATPgS bound ClpX Hexamer==
-<StructureSection load='4i81' size='340' side='right' caption='[[4i81]], [[Resolution|resolution]] 3.82&Aring;' scene=''>
+<StructureSection load='4i81' size='340' side='right'caption='[[4i81]], [[Resolution|resolution]] 3.82&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4i81]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I81 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4i81]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I81 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3hws|3hws]], [[3hte|3hte]], [[4i4l|4i4l]], [[4i34|4i34]], [[4i5o|4i5o]], [[4i63|4i63]], [[4i8v|4i8v]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i81 OCA], [https://pdbe.org/4i81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i81 RCSB], [https://www.ebi.ac.uk/pdbsum/4i81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i81 ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b0438, clpX, JW0428, lopC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i81 OCA], [http://pdbe.org/4i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i81 RCSB], [http://www.ebi.ac.uk/pdbsum/4i81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i81 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CLPX_ECOLI CLPX_ECOLI]] ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. It may bind to the lambda O substrate protein and present it to the ClpP protease in a form that can be recognized and readily hydrolyzed by ClpP. Can perform chaperone functions in the absence of ClpP.[HAMAP-Rule:MF_00175]
+[https://www.uniprot.org/uniprot/CLPX_ECOLI CLPX_ECOLI] ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. It may bind to the lambda O substrate protein and present it to the ClpP protease in a form that can be recognized and readily hydrolyzed by ClpP. Can perform chaperone functions in the absence of ClpP.[HAMAP-Rule:MF_00175]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 27: / Line 25: @@
 __TOC__
 </StructureSection>
-[[Category: Ecoli]]
+[[Category: Escherichia coli K-12]]
-[[Category: Baker, T A]]
+[[Category: Large Structures]]
-[[Category: Glynn, S E]]
+[[Category: Baker TA]]
-[[Category: Nager, A R]]
+[[Category: Glynn SE]]
-[[Category: Sauer, R T]]
+[[Category: Nager AR]]
-[[Category: Schmitz, K R]]
+[[Category: Sauer RT]]
-[[Category: Stinson, B S]]
+[[Category: Schmitz KR]]
-[[Category: Atpase]]
+[[Category: Stinson BS]]
-[[Category: Atpg]]
-[[Category: Hexamer]]
-[[Category: Motor protein]]

4i81

From Proteopedia

Revision as of 08:47, 9 November 2022

Crystal Structure of ATPgS bound ClpX Hexamer

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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