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3rga
From Proteopedia
(Difference between revisions)
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==Crystal structure of epoxide hydrolase for polyether lasalocid A biosynthesis== | ==Crystal structure of epoxide hydrolase for polyether lasalocid A biosynthesis== | ||
| - | <StructureSection load='3rga' size='340' side='right' caption='[[3rga]], [[Resolution|resolution]] 1.59Å' scene=''> | + | <StructureSection load='3rga' size='340' side='right'caption='[[3rga]], [[Resolution|resolution]] 1.59Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3rga]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3rga]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/'streptomyces_lasaliensis' 'streptomyces lasaliensis']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RGA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RGA FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ILD:(4R,5S)-3-[(2R)-2-{(2S,2R,4S,5S,5R)-2,5-DIETHYL-5-[(1S)-1-HYDROXYETHYL]-4-METHYLOCTAHYDRO-2,2-BIFURAN-5-YL}BUTANOYL]-4-METHYL-5-PHENYL-1,3-OXAZOLIDIN-2-ONE'>ILD</scene>, <scene name='pdbligand=LSB:(4R,5S)-3-[(2R,3S,4S)-2-ETHYL-5-[(3R)-2-ETHYL-3-[2-[(2R,3R)-2-ETHYL-3-METHYL-OXIRAN-2-YL]ETHYL]OXIRAN-2-YL]-3-HYDROXY-4-METHYL-PENTANOYL]-4-METHYL-5-PHENYL-1,3-OXAZOLIDIN-2-ONE'>LSB</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ILD:(4R,5S)-3-[(2R)-2-{(2S,2R,4S,5S,5R)-2,5-DIETHYL-5-[(1S)-1-HYDROXYETHYL]-4-METHYLOCTAHYDRO-2,2-BIFURAN-5-YL}BUTANOYL]-4-METHYL-5-PHENYL-1,3-OXAZOLIDIN-2-ONE'>ILD</scene>, <scene name='pdbligand=LSB:(4R,5S)-3-[(2R,3S,4S)-2-ETHYL-5-[(3R)-2-ETHYL-3-[2-[(2R,3R)-2-ETHYL-3-METHYL-OXIRAN-2-YL]ETHYL]OXIRAN-2-YL]-3-HYDROXY-4-METHYL-PENTANOYL]-4-METHYL-5-PHENYL-1,3-OXAZOLIDIN-2-ONE'>LSB</scene>, <scene name='pdbligand=MOH:METHANOL'>MOH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lasB, lsd19 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lasB, lsd19 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=324833 'Streptomyces lasaliensis'])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rga OCA], [https://pdbe.org/3rga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rga RCSB], [https://www.ebi.ac.uk/pdbsum/3rga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rga ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/LSD19_STRLS LSD19_STRLS]] Epoxide hydrolase responsible for the double epoxide-opening cyclization of bisepoxyprelasalocid A to form lasalocid A, a polyether antibiotic. In vitro, accepts various substrate analogs differing in the left segment of lasalocid and epoxide stereochemistry to afford products with excellent regioselectivity.<ref>PMID:18710235</ref> <ref>PMID:19025863</ref> <ref>PMID:20394359</ref> <ref>PMID:21375229</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
| - | *[[Epoxide hydrolase|Epoxide hydrolase]] | + | *[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Streptomyces lasaliensis]] | [[Category: Streptomyces lasaliensis]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Chen, X]] | [[Category: Chen, X]] | ||
[[Category: Hotta, K]] | [[Category: Hotta, K]] | ||
Revision as of 06:02, 15 June 2022
Crystal structure of epoxide hydrolase for polyether lasalocid A biosynthesis
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