This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4mdt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine==
==Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine==
-
<StructureSection load='4mdt' size='340' side='right' caption='[[4mdt]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
+
<StructureSection load='4mdt' size='340' side='right'caption='[[4mdt]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4mdt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MDT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4mdt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MDT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=24G:URIDINE-5-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE'>24G</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=24G:URIDINE-5-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE'>24G</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lpxC, O3O_04310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mdt OCA], [https://pdbe.org/4mdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mdt RCSB], [https://www.ebi.ac.uk/pdbsum/4mdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mdt ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mdt OCA], [http://pdbe.org/4mdt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mdt RCSB], [http://www.ebi.ac.uk/pdbsum/4mdt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mdt ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/K0BGQ2_ECO1E K0BGQ2_ECO1E]] Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity).[HAMAP-Rule:MF_00388][SAAS:SAAS015870_004_013136]
 
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Clayton, G M]]
+
[[Category: Large Structures]]
-
[[Category: Klein, D J]]
+
[[Category: Clayton GM]]
-
[[Category: Kornienko, M]]
+
[[Category: Klein DJ]]
-
[[Category: Lumb, K J]]
+
[[Category: Kornienko M]]
-
[[Category: Miesel, L]]
+
[[Category: Lumb KJ]]
-
[[Category: Patel, S B]]
+
[[Category: Miesel L]]
-
[[Category: Reid, J C]]
+
[[Category: Patel SB]]
-
[[Category: Rickert, K W]]
+
[[Category: Reid JC]]
-
[[Category: Sharma, S]]
+
[[Category: Rickert KW]]
-
[[Category: Singh, S B]]
+
[[Category: Sharma S]]
-
[[Category: Soisson, S M]]
+
[[Category: Singh SB]]
-
[[Category: Tummala, S]]
+
[[Category: Soisson SM]]
-
[[Category: Zugay-Murphy, J]]
+
[[Category: Tummala S]]
-
[[Category: Deacetylase]]
+
[[Category: Zugay-Murphy J]]
-
[[Category: Hydrolase]]
+

Revision as of 11:11, 21 December 2022

Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine

PDB ID 4mdt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4mdt"
Personal tools