This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3m4j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:48, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with PALAO==
==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with PALAO==
-
<StructureSection load='3m4j' size='340' side='right' caption='[[3m4j]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3m4j' size='340' side='right'caption='[[3m4j]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3m4j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xance Xance]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M4J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3m4j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M4J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PA9:N~2~-ACETYL-N~5~-(PHOSPHONOACETYL)-L-ORNITHINE'>PA9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=PA9:N~2~-ACETYL-N~5~-(PHOSPHONOACETYL)-L-ORNITHINE'>PA9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kzo|3kzo]], [[3kzk|3kzk]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4j OCA], [https://pdbe.org/3m4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m4j RCSB], [https://www.ebi.ac.uk/pdbsum/3m4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4j ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argF, argF', XCC2249 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=340 XANCE])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylornithine_carbamoyltransferase N-acetylornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.9 2.1.3.9] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4j OCA], [http://pdbe.org/3m4j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m4j RCSB], [http://www.ebi.ac.uk/pdbsum/3m4j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4j ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AOTC_XANCP AOTC_XANCP]] Catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine.
+
[https://www.uniprot.org/uniprot/AOTC_XANCP AOTC_XANCP] Catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m4/3m4j_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m4/3m4j_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 29:
</div>
</div>
<div class="pdbe-citations 3m4j" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3m4j" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[N-acetylornithine carbamoyltransferase|N-acetylornithine carbamoyltransferase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: N-acetylornithine carbamoyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Xance]]
+
[[Category: Xanthomonas campestris pv. campestris]]
-
[[Category: Allewell, N M]]
+
[[Category: Allewell NM]]
-
[[Category: Li, Y]]
+
[[Category: Li Y]]
-
[[Category: Shi, D]]
+
[[Category: Shi D]]
-
[[Category: Tuchman, M]]
+
[[Category: Tuchman M]]
-
[[Category: Yu, X]]
+
[[Category: Yu X]]
-
[[Category: Transcarbamylase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with PALAO

PDB ID 3m4j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3m4j"
Personal tools