This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4jb3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of BT_0970, a had family phosphatase from bacteroides thetaiotaomicron VPI-5482, TARGET EFI-501083, with bound sodium and glycerol, closed lid, ordered loop==
==Crystal structure of BT_0970, a had family phosphatase from bacteroides thetaiotaomicron VPI-5482, TARGET EFI-501083, with bound sodium and glycerol, closed lid, ordered loop==
-
<StructureSection load='4jb3' size='340' side='right' caption='[[4jb3]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='4jb3' size='340' side='right'caption='[[4jb3]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4jb3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JB3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JB3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4jb3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JB3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_0970 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226186 BACTN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jb3 OCA], [https://pdbe.org/4jb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jb3 RCSB], [https://www.ebi.ac.uk/pdbsum/4jb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jb3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jb3 OCA], [http://pdbe.org/4jb3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jb3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jb3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jb3 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RIBX_BACTN RIBX_BACTN] Catalyzes the dephosphorylation of D-ribitol-5-phosphate and D-ribitol-1-phosphate. Is also able to dephosphorylate 5-amino-6-(5-phospho-D-ribitylamino)uracil, and thus could be involved in the riboflavin biosynthesis pathway.<ref>PMID:25513739</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bactn]]
+
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
-
[[Category: Allen, K N]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Bhosle, R]]
+
[[Category: Allen KN]]
-
[[Category: Chowdhury, S]]
+
[[Category: Almo SC]]
-
[[Category: Dunaway-Mariano, D]]
+
[[Category: Bhosle R]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Chowdhury S]]
-
[[Category: Evans, B]]
+
[[Category: Dunaway-Mariano D]]
-
[[Category: Gerlt, J A]]
+
[[Category: Evans B]]
-
[[Category: Ghosh, A]]
+
[[Category: Gerlt JA]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Ghosh A]]
-
[[Category: Hammonds, J]]
+
[[Category: Hammonds J]]
-
[[Category: Hillerich, B]]
+
[[Category: Hillerich B]]
-
[[Category: Imker, H J]]
+
[[Category: Imker HJ]]
-
[[Category: Kumar, P R]]
+
[[Category: Kumar PR]]
-
[[Category: Love, J]]
+
[[Category: Love J]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Scott Glenn A]]
-
[[Category: Seidel, R D]]
+
[[Category: Seidel RD]]
-
[[Category: Stead, M]]
+
[[Category: Stead M]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Washington, E]]
+
[[Category: Washington E]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Had]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Structural genomic]]
+

Revision as of 11:03, 24 November 2022

Crystal structure of BT_0970, a had family phosphatase from bacteroides thetaiotaomicron VPI-5482, TARGET EFI-501083, with bound sodium and glycerol, closed lid, ordered loop

PDB ID 4jb3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4jb3"
Personal tools