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4ptb

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==Crystal structure of human SP100 PHD-Bromodomain in the free state==
==Crystal structure of human SP100 PHD-Bromodomain in the free state==
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<StructureSection load='4ptb' size='340' side='right' caption='[[4ptb]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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<StructureSection load='4ptb' size='340' side='right'caption='[[4ptb]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4ptb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PTB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4ptb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PTB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SP100 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ptb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ptb OCA], [https://pdbe.org/4ptb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ptb RCSB], [https://www.ebi.ac.uk/pdbsum/4ptb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ptb ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ptb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ptb OCA], [http://pdbe.org/4ptb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ptb RCSB], [http://www.ebi.ac.uk/pdbsum/4ptb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ptb ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SP100_HUMAN SP100_HUMAN] Together with PML, this tumor suppressor is a major constituent of the PML bodies, a subnuclear organelle involved in a large number of physiological processes including cell growth, differentiation and apoptosis. Functions as a transcriptional coactivator of ETS1 and ETS2 according to PubMed:11909962. Under certain conditions, it may also act as a corepressor of ETS1 preventing its binding to DNA according to PubMed:15247905. Through the regulation of ETS1 it may play a role in angiogenesis, controlling endothelial cell motility and invasion. Through interaction with the MRN complex it may be involved in the regulation of telomeres lengthening. May also regulate TP53-mediated transcription and through CASP8AP2, regulate FAS-mediated apoptosis. Also plays a role in infection by viruses, including human cytomegalovirus and Epstein-Barr virus, through mechanisms that may involve chromatin and/or transcriptional regulation.<ref>PMID:11909962</ref> <ref>PMID:14647468</ref> <ref>PMID:15247905</ref> <ref>PMID:15592518</ref> <ref>PMID:15767676</ref> <ref>PMID:16177824</ref> <ref>PMID:17245429</ref> <ref>PMID:21274506</ref> <ref>PMID:21880768</ref>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
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[[Category: Arrowsmith, C H]]
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[[Category: Large Structures]]
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[[Category: Bountra, C]]
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[[Category: Arrowsmith CH]]
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[[Category: Burgess-Brown, N]]
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[[Category: Bountra C]]
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[[Category: Delft, F von]]
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[[Category: Burgess-Brown N]]
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[[Category: Edwards, A M]]
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[[Category: Edwards AM]]
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[[Category: Filippakopoulos, P]]
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[[Category: Filippakopoulos P]]
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[[Category: Knapp, S]]
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[[Category: Knapp S]]
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[[Category: Krojer, T]]
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[[Category: Krojer T]]
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[[Category: Newman, J]]
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[[Category: Newman J]]
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[[Category: Nunez-Alonso, G]]
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[[Category: Nunez-Alonso G]]
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[[Category: Savitsky, P]]
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[[Category: Savitsky P]]
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[[Category: Szykowska, A]]
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[[Category: Szykowska A]]
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[[Category: Tallant, C]]
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[[Category: Tallant C]]
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[[Category: Nuclear autoantigen sp-100]]
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[[Category: Von Delft F]]
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[[Category: Nuclear dot-associated sp100 protein]]
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[[Category: Speckled 100 kda]]
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[[Category: Transcription]]
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Revision as of 07:29, 8 February 2023

Crystal structure of human SP100 PHD-Bromodomain in the free state

PDB ID 4ptb

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