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1nt9
From Proteopedia
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[[Image:1nt9.gif|left|200px]] | [[Image:1nt9.gif|left|200px]] | ||
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'''Complete 12-subunit RNA polymerase II''' | '''Complete 12-subunit RNA polymerase II''' | ||
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[[Category: Cramer, P.]] | [[Category: Cramer, P.]] | ||
[[Category: Kettenberger, H.]] | [[Category: Kettenberger, H.]] | ||
| - | [[Category: | + | [[Category: Cellular rna polymerase]] |
| - | [[Category: | + | [[Category: Dna-dependent rna polymerase]] |
| - | [[Category: | + | [[Category: Gene expression]] |
| - | [[Category: | + | [[Category: Messenger rna synthesis]] |
| - | [[Category: | + | [[Category: Mrna]] |
| - | [[Category: | + | [[Category: Multisubunit complex]] |
| - | [[Category: | + | [[Category: Transcription]] |
| - | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 02:57:03 2008'' | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | |
Revision as of 23:57, 2 May 2008
Complete 12-subunit RNA polymerase II
Overview
RNA polymerase (Pol) II consists of a 10-polypeptide catalytic core and the two-subunit Rpb4/7 complex that is required for transcription initiation. Previous structures of the Pol II core revealed a "clamp," which binds the DNA template strand via three "switch regions," and a flexible "linker" to the C-terminal repeat domain (CTD). Here we derived a model of the complete Pol II by fitting structures of the core and Rpb4/7 to a 4.2-A crystallographic electron density map. Rpb4/7 protrudes from the polymerase "upstream face," on which initiation factors assemble for promoter DNA loading. Rpb7 forms a wedge between the clamp and the linker, restricting the clamp to a closed position. The wedge allosterically prevents entry of the promoter DNA duplex into the active center cleft and induces in two switch regions a conformation poised for template-strand binding. Interaction of Rpb4/7 with the linker explains Rpb4-mediated recruitment of the CTD phosphatase to the CTD during Pol II recycling. The core-Rpb7 interaction and some functions of Rpb4/7 are apparently conserved in all eukaryotic and archaeal RNA polymerases but not in the bacterial enzyme.
About this Structure
1NT9 is a Protein complex structure of sequences from Saccharomyces cerevisiae. Full crystallographic information is available from OCA.
Reference
Architecture of initiation-competent 12-subunit RNA polymerase II., Armache KJ, Kettenberger H, Cramer P, Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):6964-8. Epub 2003 May 13. PMID:12746495 Page seeded by OCA on Sat May 3 02:57:03 2008
