This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nth

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1nth.gif|left|200px]]
[[Image:1nth.gif|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1nth |SIZE=350|CAPTION= <scene name='initialview01'>1nth</scene>, resolution 1.55&Aring;
+
The line below this paragraph, containing "STRUCTURE_1nth", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=BGX:4-METHYL-PYRROLINE-5-CARBOXYLIC+ACID'>BGX</scene>, <scene name='pdbligand=X:2&#39;-DEOXY-N7-(8,9-DIHYDRO-9-HYDROXY-10-DEHYDROXY-AFLATOXIN)GUANOSINE+MONOPHOSPHATE'>X</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1nth| PDB=1nth | SCENE= }}
-
|RELATEDENTRY=[[1l2q|1L2Q]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nth FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nth OCA], [http://www.ebi.ac.uk/pdbsum/1nth PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nth RCSB]</span>
+
-
}}
+
'''Crystal structure of the methanosarcina barkeri monomethylamine methyltransferase (MTMB)'''
'''Crystal structure of the methanosarcina barkeri monomethylamine methyltransferase (MTMB)'''
Line 19: Line 16:
==About this Structure==
==About this Structure==
-
1NTH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri Methanosarcina barkeri]. This structure supersedes the now removed PDB entry 1L2R. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NTH OCA].
+
1NTH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri Methanosarcina barkeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1l2r 1l2r]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NTH OCA].
==Reference==
==Reference==
Line 31: Line 28:
[[Category: James, C M.]]
[[Category: James, C M.]]
[[Category: Krzycki, J A.]]
[[Category: Krzycki, J A.]]
-
[[Category: tim barrel]]
+
[[Category: Tim barrel]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 02:57:32 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:35:18 2008''
+

Revision as of 23:57, 2 May 2008

Template:STRUCTURE 1nth

Crystal structure of the methanosarcina barkeri monomethylamine methyltransferase (MTMB)


Overview

Genes encoding methanogenic methylamine methyltransferases all contain an in-frame amber (UAG) codon that is read through during translation. We have identified the UAG-encoded residue in a 1.55 angstrom resolution structure of the Methanosarcina barkeri monomethylamine methyltransferase (MtmB). This structure reveals a homohexamer comprised of individual subunits with a TIM barrel fold. The electron density for the UAG-encoded residue is distinct from any of the 21 natural amino acids. Instead it appears consistent with a lysine in amide-linkage to (4R,5R)-4-substituted-pyrroline-5-carboxylate. We suggest that this amino acid be named l-pyrrolysine.

About this Structure

1NTH is a Single protein structure of sequence from Methanosarcina barkeri. This structure supersedes the now removed PDB entry 1l2r. Full crystallographic information is available from OCA.

Reference

A new UAG-encoded residue in the structure of a methanogen methyltransferase., Hao B, Gong W, Ferguson TK, James CM, Krzycki JA, Chan MK, Science. 2002 May 24;296(5572):1462-6. PMID:12029132 Page seeded by OCA on Sat May 3 02:57:32 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools