This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4f4r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop==
==Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop==
-
<StructureSection load='4f4r' size='340' side='right' caption='[[4f4r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='4f4r' size='340' side='right'caption='[[4f4r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4f4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chrsd Chrsd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F4R FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4f4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromohalobacter_salexigens_DSM_3043 Chromohalobacter salexigens DSM 3043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F4R FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Csal_2974 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290398 CHRSD])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f4r OCA], [https://pdbe.org/4f4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f4r RCSB], [https://www.ebi.ac.uk/pdbsum/4f4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f4r ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannonate_dehydratase Mannonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.8 4.2.1.8] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f4r OCA], [http://pdbe.org/4f4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4f4r RCSB], [http://www.ebi.ac.uk/pdbsum/4f4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4f4r ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DMGD_CHRSD DMGD_CHRSD] Has low dehydratase activity with D-mannonate and D-gluconate, suggesting that these are not physiological substrates and that it has no significant role in the in vivo degradation of these compounds. Has no detectable activity with a panel of 70 other acid sugars (in vitro).<ref>PMID:24697546</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chrsd]]
+
[[Category: Chromohalobacter salexigens DSM 3043]]
-
[[Category: Mannonate dehydratase]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Bhosle, R]]
+
[[Category: Almo SC]]
-
[[Category: Chowdhury, S]]
+
[[Category: Bhosle R]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Chowdhury S]]
-
[[Category: Evans, B]]
+
[[Category: Evans B]]
-
[[Category: Gerlt, J A]]
+
[[Category: Gerlt JA]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Hammonds J]]
-
[[Category: Hammonds, J]]
+
[[Category: Hillerich B]]
-
[[Category: Hillerich, B]]
+
[[Category: Imker HJ]]
-
[[Category: Imker, H J]]
+
[[Category: Love J]]
-
[[Category: Love, J]]
+
[[Category: Morisco LL]]
-
[[Category: Morisco, L L]]
+
[[Category: Scott Glenn A]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Seidel RD]]
-
[[Category: Seidel, R D]]
+
[[Category: Sojitra S]]
-
[[Category: Sojitra, S]]
+
[[Category: Toro R]]
-
[[Category: Toro, R]]
+
[[Category: Vetting MW]]
-
[[Category: Vetting, M W]]
+
[[Category: Washington E]]
-
[[Category: Washington, E]]
+
[[Category: Wasserman SR]]
-
[[Category: Wasserman, S R]]
+
-
[[Category: Enolase]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Lyase]]
+
-
[[Category: Structural genomic]]
+

Revision as of 04:34, 7 October 2022

Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop

PDB ID 4f4r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4f4r"
Personal tools