This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3t9g
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii== | ==The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii== | ||
| - | <StructureSection load='3t9g' size='340' side='right' caption='[[3t9g]], [[Resolution|resolution]] 1.50Å' scene=''> | + | <StructureSection load='3t9g' size='340' side='right'caption='[[3t9g]], [[Resolution|resolution]] 1.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3t9g]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3t9g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"anaerocellum_thermophilum"_svetlichnyi_et_al._1990 "anaerocellum thermophilum" svetlichnyi et al. 1990]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T9G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T9G FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Athe_1854, Cbes_1854 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Athe_1854, Cbes_1854 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31899 "Anaerocellum thermophilum" Svetlichnyi et al. 1990])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t9g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t9g OCA], [https://pdbe.org/3t9g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t9g RCSB], [https://www.ebi.ac.uk/pdbsum/3t9g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t9g ProSAT]</span></td></tr> |
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 22: | Line 22: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Anaerocellum thermophilum svetlichnyi | + | [[Category: Anaerocellum thermophilum svetlichnyi et al. 1990]] |
| + | [[Category: Large Structures]] | ||
[[Category: Pectate lyase]] | [[Category: Pectate lyase]] | ||
[[Category: Alahuhta, P M]] | [[Category: Alahuhta, P M]] | ||
Revision as of 16:48, 6 July 2022
The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii
| |||||||||||
